Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02282

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02281 and H281DRAFT_02282 are separated by 48 nucleotidesH281DRAFT_02282 and H281DRAFT_02283 are separated by 138 nucleotidesH281DRAFT_02283 and H281DRAFT_02284 are separated by 133 nucleotidesH281DRAFT_02284 and H281DRAFT_02285 overlap by 11 nucleotides H281DRAFT_02281: H281DRAFT_02281 - hypothetical protein, at 426,706 to 427,509 _02281 H281DRAFT_02282: H281DRAFT_02282 - hypothetical protein, at 427,558 to 428,106 _02282 H281DRAFT_02283: H281DRAFT_02283 - hypothetical protein, at 428,245 to 428,460 _02283 H281DRAFT_02284: H281DRAFT_02284 - hypothetical protein, at 428,594 to 428,917 _02284 H281DRAFT_02285: H281DRAFT_02285 - Phage integrase family protein, at 428,907 to 430,307 _02285 Position (kb) 427 428 429Strain fitness (log2 ratio) -2 -1 0 1 2 3at 426.646 kb on + strandat 426.646 kb on + strandat 426.647 kb on - strandat 426.647 kb on - strandat 426.659 kb on + strandat 426.759 kb on + strandat 426.759 kb on + strandat 426.794 kb on + strand, within H281DRAFT_02281at 426.796 kb on + strand, within H281DRAFT_02281at 426.797 kb on - strand, within H281DRAFT_02281at 426.797 kb on - strand, within H281DRAFT_02281at 426.906 kb on + strand, within H281DRAFT_02281at 426.919 kb on + strand, within H281DRAFT_02281at 426.919 kb on + strand, within H281DRAFT_02281at 426.920 kb on - strand, within H281DRAFT_02281at 426.982 kb on + strand, within H281DRAFT_02281at 426.983 kb on - strand, within H281DRAFT_02281at 427.046 kb on - strand, within H281DRAFT_02281at 427.078 kb on + strand, within H281DRAFT_02281at 427.079 kb on - strand, within H281DRAFT_02281at 427.079 kb on - strand, within H281DRAFT_02281at 427.109 kb on + strand, within H281DRAFT_02281at 427.109 kb on + strand, within H281DRAFT_02281at 427.109 kb on + strand, within H281DRAFT_02281at 427.150 kb on + strand, within H281DRAFT_02281at 427.151 kb on - strand, within H281DRAFT_02281at 427.212 kb on + strand, within H281DRAFT_02281at 427.213 kb on - strand, within H281DRAFT_02281at 427.213 kb on - strand, within H281DRAFT_02281at 427.266 kb on - strand, within H281DRAFT_02281at 427.266 kb on - strand, within H281DRAFT_02281at 427.285 kb on + strand, within H281DRAFT_02281at 427.286 kb on - strand, within H281DRAFT_02281at 427.286 kb on - strand, within H281DRAFT_02281at 427.387 kb on + strandat 427.387 kb on + strand, within H281DRAFT_02281at 427.388 kb on - strand, within H281DRAFT_02281at 427.388 kb on - strand, within H281DRAFT_02281at 427.388 kb on - strand, within H281DRAFT_02281at 427.453 kb on + strandat 427.511 kb on + strandat 427.511 kb on + strandat 427.511 kb on + strandat 427.512 kb on - strandat 427.512 kb on - strandat 427.525 kb on - strandat 427.562 kb on - strandat 427.576 kb on + strandat 427.582 kb on + strandat 427.583 kb on - strandat 427.668 kb on + strand, within H281DRAFT_02282at 427.669 kb on - strand, within H281DRAFT_02282at 427.711 kb on + strand, within H281DRAFT_02282at 427.712 kb on - strand, within H281DRAFT_02282at 427.712 kb on - strand, within H281DRAFT_02282at 427.717 kb on + strand, within H281DRAFT_02282at 427.717 kb on + strand, within H281DRAFT_02282at 427.718 kb on - strandat 427.718 kb on - strand, within H281DRAFT_02282at 427.718 kb on - strand, within H281DRAFT_02282at 427.718 kb on - strand, within H281DRAFT_02282at 427.756 kb on + strand, within H281DRAFT_02282at 427.812 kb on - strand, within H281DRAFT_02282at 427.831 kb on + strand, within H281DRAFT_02282at 427.832 kb on - strand, within H281DRAFT_02282at 427.836 kb on + strand, within H281DRAFT_02282at 427.836 kb on + strand, within H281DRAFT_02282at 427.837 kb on - strand, within H281DRAFT_02282at 427.864 kb on + strand, within H281DRAFT_02282at 427.864 kb on + strand, within H281DRAFT_02282at 427.864 kb on + strand, within H281DRAFT_02282at 427.864 kb on + strand, within H281DRAFT_02282at 427.865 kb on - strand, within H281DRAFT_02282at 427.865 kb on - strand, within H281DRAFT_02282at 427.866 kb on + strand, within H281DRAFT_02282at 427.866 kb on + strand, within H281DRAFT_02282at 428.108 kb on + strandat 428.109 kb on - strandat 428.109 kb on - strandat 428.152 kb on - strandat 428.186 kb on + strandat 428.203 kb on - strandat 428.222 kb on + strandat 428.222 kb on + strandat 428.222 kb on + strandat 428.223 kb on - strandat 428.223 kb on - strandat 428.272 kb on + strand, within H281DRAFT_02283at 428.417 kb on - strand, within H281DRAFT_02283at 428.417 kb on - strand, within H281DRAFT_02283at 428.435 kb on + strand, within H281DRAFT_02283at 428.435 kb on + strand, within H281DRAFT_02283at 428.436 kb on - strand, within H281DRAFT_02283at 428.466 kb on + strandat 428.474 kb on + strandat 428.527 kb on + strandat 428.608 kb on + strandat 428.609 kb on - strandat 428.641 kb on + strand, within H281DRAFT_02284at 428.706 kb on + strand, within H281DRAFT_02284at 428.706 kb on + strand, within H281DRAFT_02284at 428.706 kb on + strand, within H281DRAFT_02284at 428.832 kb on - strand, within H281DRAFT_02284at 429.062 kb on - strand, within H281DRAFT_02285at 429.089 kb on + strand, within H281DRAFT_02285

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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426,646 + -0.0
426,646 + +3.4
426,647 - -0.8
426,647 - +0.5
426,659 + +1.3
426,759 + +0.1
426,759 + -0.7
426,794 + H281DRAFT_02281 0.11 +0.1
426,796 + H281DRAFT_02281 0.11 -0.7
426,797 - H281DRAFT_02281 0.11 +0.0
426,797 - H281DRAFT_02281 0.11 +0.5
426,906 + H281DRAFT_02281 0.25 -0.1
426,919 + H281DRAFT_02281 0.26 -0.3
426,919 + H281DRAFT_02281 0.26 +0.5
426,920 - H281DRAFT_02281 0.27 -0.9
426,982 + H281DRAFT_02281 0.34 -0.8
426,983 - H281DRAFT_02281 0.34 -0.6
427,046 - H281DRAFT_02281 0.42 +0.6
427,078 + H281DRAFT_02281 0.46 +0.2
427,079 - H281DRAFT_02281 0.46 +0.7
427,079 - H281DRAFT_02281 0.46 -0.2
427,109 + H281DRAFT_02281 0.50 -0.8
427,109 + H281DRAFT_02281 0.50 -0.3
427,109 + H281DRAFT_02281 0.50 +0.3
427,150 + H281DRAFT_02281 0.55 +0.8
427,151 - H281DRAFT_02281 0.55 -0.1
427,212 + H281DRAFT_02281 0.63 -1.0
427,213 - H281DRAFT_02281 0.63 -0.8
427,213 - H281DRAFT_02281 0.63 +0.1
427,266 - H281DRAFT_02281 0.70 +0.8
427,266 - H281DRAFT_02281 0.70 +1.3
427,285 + H281DRAFT_02281 0.72 -0.0
427,286 - H281DRAFT_02281 0.72 -1.5
427,286 - H281DRAFT_02281 0.72 +0.3
427,387 + +2.7
427,387 + H281DRAFT_02281 0.85 +0.3
427,388 - H281DRAFT_02281 0.85 -1.7
427,388 - H281DRAFT_02281 0.85 +1.1
427,388 - H281DRAFT_02281 0.85 -0.1
427,453 + -0.2
427,511 + -0.5
427,511 + +0.4
427,511 + +0.3
427,512 - +0.2
427,512 - -0.0
427,525 - -0.3
427,562 - +0.0
427,576 + +0.4
427,582 + +1.0
427,583 - +1.1
427,668 + H281DRAFT_02282 0.20 +0.4
427,669 - H281DRAFT_02282 0.20 +1.0
427,711 + H281DRAFT_02282 0.28 -0.1
427,712 - H281DRAFT_02282 0.28 -0.2
427,712 - H281DRAFT_02282 0.28 -0.5
427,717 + H281DRAFT_02282 0.29 -0.0
427,717 + H281DRAFT_02282 0.29 -0.7
427,718 - -0.9
427,718 - H281DRAFT_02282 0.29 +0.7
427,718 - H281DRAFT_02282 0.29 +1.9
427,718 - H281DRAFT_02282 0.29 +0.8
427,756 + H281DRAFT_02282 0.36 -1.3
427,812 - H281DRAFT_02282 0.46 -0.0
427,831 + H281DRAFT_02282 0.50 +1.1
427,832 - H281DRAFT_02282 0.50 -0.8
427,836 + H281DRAFT_02282 0.51 -0.5
427,836 + H281DRAFT_02282 0.51 -0.6
427,837 - H281DRAFT_02282 0.51 +0.6
427,864 + H281DRAFT_02282 0.56 -0.5
427,864 + H281DRAFT_02282 0.56 -0.3
427,864 + H281DRAFT_02282 0.56 -0.4
427,864 + H281DRAFT_02282 0.56 +1.2
427,865 - H281DRAFT_02282 0.56 -0.8
427,865 - H281DRAFT_02282 0.56 -1.3
427,866 + H281DRAFT_02282 0.56 +0.0
427,866 + H281DRAFT_02282 0.56 +2.5
428,108 + +0.4
428,109 - +0.2
428,109 - -0.2
428,152 - -0.6
428,186 + +0.1
428,203 - +1.0
428,222 + +0.6
428,222 + +0.8
428,222 + -1.3
428,223 - +0.9
428,223 - -0.4
428,272 + H281DRAFT_02283 0.12 +0.6
428,417 - H281DRAFT_02283 0.80 +0.6
428,417 - H281DRAFT_02283 0.80 +0.1
428,435 + H281DRAFT_02283 0.88 -0.1
428,435 + H281DRAFT_02283 0.88 +1.0
428,436 - H281DRAFT_02283 0.88 +0.2
428,466 + -0.6
428,474 + +0.2
428,527 + +0.0
428,608 + +0.1
428,609 - +2.1
428,641 + H281DRAFT_02284 0.15 +1.1
428,706 + H281DRAFT_02284 0.35 +1.7
428,706 + H281DRAFT_02284 0.35 +0.4
428,706 + H281DRAFT_02284 0.35 -0.2
428,832 - H281DRAFT_02284 0.73 +0.5
429,062 - H281DRAFT_02285 0.11 -2.0
429,089 + H281DRAFT_02285 0.13 +0.5

Or see this region's nucleotide sequence