Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02008

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02007 and H281DRAFT_02008 are separated by 248 nucleotidesH281DRAFT_02008 and H281DRAFT_02009 are separated by 80 nucleotidesH281DRAFT_02009 and H281DRAFT_02010 are separated by 341 nucleotides H281DRAFT_02007: H281DRAFT_02007 - phosphoenolpyruvate--protein phosphotransferase, at 123,919 to 125,667 _02007 H281DRAFT_02008: H281DRAFT_02008 - phosphocarrier protein, at 125,916 to 126,185 _02008 H281DRAFT_02009: H281DRAFT_02009 - PTS system, ascorbate-specific IIA component, at 126,266 to 126,754 _02009 H281DRAFT_02010: H281DRAFT_02010 - glutathione synthase, at 127,096 to 128,052 _02010 Position (kb) 125 126 127Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 124.934 kb on + strand, within H281DRAFT_02007at 124.934 kb on + strand, within H281DRAFT_02007at 124.934 kb on + strand, within H281DRAFT_02007at 124.934 kb on + strandat 124.935 kb on - strand, within H281DRAFT_02007at 124.935 kb on - strand, within H281DRAFT_02007at 124.935 kb on - strand, within H281DRAFT_02007at 125.082 kb on + strand, within H281DRAFT_02007at 125.082 kb on + strand, within H281DRAFT_02007at 125.082 kb on + strand, within H281DRAFT_02007at 125.082 kb on + strand, within H281DRAFT_02007at 125.082 kb on + strand, within H281DRAFT_02007at 125.082 kb on + strand, within H281DRAFT_02007at 125.082 kb on + strand, within H281DRAFT_02007at 125.083 kb on - strand, within H281DRAFT_02007at 125.092 kb on - strand, within H281DRAFT_02007at 125.092 kb on - strand, within H281DRAFT_02007at 125.092 kb on - strand, within H281DRAFT_02007at 125.092 kb on - strand, within H281DRAFT_02007at 125.092 kb on - strand, within H281DRAFT_02007at 125.136 kb on + strand, within H281DRAFT_02007at 125.137 kb on - strand, within H281DRAFT_02007at 125.137 kb on - strand, within H281DRAFT_02007at 125.294 kb on + strand, within H281DRAFT_02007at 125.294 kb on + strand, within H281DRAFT_02007at 125.366 kb on + strand, within H281DRAFT_02007at 125.367 kb on - strand, within H281DRAFT_02007at 125.434 kb on + strand, within H281DRAFT_02007at 125.434 kb on + strand, within H281DRAFT_02007at 125.434 kb on + strand, within H281DRAFT_02007at 125.435 kb on - strand, within H281DRAFT_02007at 125.435 kb on - strand, within H281DRAFT_02007at 125.435 kb on - strand, within H281DRAFT_02007at 125.574 kb on - strandat 125.574 kb on - strandat 125.581 kb on + strandat 125.581 kb on + strandat 125.581 kb on + strandat 125.582 kb on - strandat 125.609 kb on + strandat 125.609 kb on + strandat 125.609 kb on + strandat 125.609 kb on + strandat 125.610 kb on - strandat 125.610 kb on - strandat 125.629 kb on - strandat 125.680 kb on + strandat 125.680 kb on + strandat 125.680 kb on + strandat 125.680 kb on + strandat 125.681 kb on - strandat 125.681 kb on - strandat 125.681 kb on - strandat 125.736 kb on - strandat 125.737 kb on + strandat 125.738 kb on - strandat 125.797 kb on + strandat 125.844 kb on + strandat 125.899 kb on + strandat 125.899 kb on + strandat 125.899 kb on + strandat 125.899 kb on + strandat 125.900 kb on - strandat 125.937 kb on - strandat 126.045 kb on - strand, within H281DRAFT_02008at 126.062 kb on + strand, within H281DRAFT_02008at 126.100 kb on + strand, within H281DRAFT_02008at 126.100 kb on + strand, within H281DRAFT_02008at 126.100 kb on + strand, within H281DRAFT_02008at 126.100 kb on + strand, within H281DRAFT_02008at 126.101 kb on - strand, within H281DRAFT_02008at 126.101 kb on - strand, within H281DRAFT_02008at 126.101 kb on - strand, within H281DRAFT_02008at 126.101 kb on - strand, within H281DRAFT_02008at 126.101 kb on - strand, within H281DRAFT_02008at 126.101 kb on - strand, within H281DRAFT_02008at 126.164 kb on + strandat 126.206 kb on + strandat 126.206 kb on + strandat 126.207 kb on - strandat 126.207 kb on - strandat 126.240 kb on + strandat 126.241 kb on - strandat 126.241 kb on - strandat 126.241 kb on - strandat 126.244 kb on + strandat 126.245 kb on - strandat 126.245 kb on - strandat 126.245 kb on - strandat 126.245 kb on - strandat 126.245 kb on - strandat 126.684 kb on + strand, within H281DRAFT_02009at 126.956 kb on + strandat 126.957 kb on - strandat 126.957 kb on - strandat 126.990 kb on + strandat 126.990 kb on + strandat 126.990 kb on + strandat 126.991 kb on - strandat 126.991 kb on - strandat 126.991 kb on - strandat 127.012 kb on - strandat 127.057 kb on + strandat 127.057 kb on + strandat 127.058 kb on - strandat 127.058 kb on - strandat 127.058 kb on - strandat 127.058 kb on - strandat 127.058 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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124,934 + H281DRAFT_02007 0.58 -1.6
124,934 + H281DRAFT_02007 0.58 -1.9
124,934 + H281DRAFT_02007 0.58 +0.3
124,934 + +0.0
124,935 - H281DRAFT_02007 0.58 -1.1
124,935 - H281DRAFT_02007 0.58 -1.2
124,935 - H281DRAFT_02007 0.58 -3.6
125,082 + H281DRAFT_02007 0.66 -0.9
125,082 + H281DRAFT_02007 0.66 -1.8
125,082 + H281DRAFT_02007 0.66 -1.7
125,082 + H281DRAFT_02007 0.66 -0.9
125,082 + H281DRAFT_02007 0.66 -1.5
125,082 + H281DRAFT_02007 0.66 -1.4
125,082 + H281DRAFT_02007 0.66 -3.2
125,083 - H281DRAFT_02007 0.67 -1.3
125,092 - H281DRAFT_02007 0.67 -3.0
125,092 - H281DRAFT_02007 0.67 -0.9
125,092 - H281DRAFT_02007 0.67 -2.6
125,092 - H281DRAFT_02007 0.67 -2.1
125,092 - H281DRAFT_02007 0.67 -1.6
125,136 + H281DRAFT_02007 0.70 -0.7
125,137 - H281DRAFT_02007 0.70 -0.4
125,137 - H281DRAFT_02007 0.70 -1.2
125,294 + H281DRAFT_02007 0.79 -1.5
125,294 + H281DRAFT_02007 0.79 -2.1
125,366 + H281DRAFT_02007 0.83 -1.6
125,367 - H281DRAFT_02007 0.83 -1.9
125,434 + H281DRAFT_02007 0.87 -1.1
125,434 + H281DRAFT_02007 0.87 -1.3
125,434 + H281DRAFT_02007 0.87 -1.8
125,435 - H281DRAFT_02007 0.87 +0.4
125,435 - H281DRAFT_02007 0.87 -1.8
125,435 - H281DRAFT_02007 0.87 -1.7
125,574 - -1.0
125,574 - -2.0
125,581 + -2.2
125,581 + -2.4
125,581 + -1.1
125,582 - -0.8
125,609 + -2.0
125,609 + -2.3
125,609 + -0.7
125,609 + -1.7
125,610 - -1.5
125,610 - -1.0
125,629 - -1.9
125,680 + +0.0
125,680 + +0.4
125,680 + -1.3
125,680 + -1.0
125,681 - +0.5
125,681 - -0.0
125,681 - -0.2
125,736 - +0.2
125,737 + +1.0
125,738 - +0.0
125,797 + -1.4
125,844 + -0.3
125,899 + +0.2
125,899 + +0.2
125,899 + -3.4
125,899 + +0.9
125,900 - -0.0
125,937 - -0.9
126,045 - H281DRAFT_02008 0.48 -3.5
126,062 + H281DRAFT_02008 0.54 -3.5
126,100 + H281DRAFT_02008 0.68 -3.2
126,100 + H281DRAFT_02008 0.68 -3.3
126,100 + H281DRAFT_02008 0.68 -1.6
126,100 + H281DRAFT_02008 0.68 +0.8
126,101 - H281DRAFT_02008 0.69 -3.1
126,101 - H281DRAFT_02008 0.69 -4.3
126,101 - H281DRAFT_02008 0.69 -3.5
126,101 - H281DRAFT_02008 0.69 -3.8
126,101 - H281DRAFT_02008 0.69 -4.2
126,101 - H281DRAFT_02008 0.69 -0.8
126,164 + -3.1
126,206 + -2.5
126,206 + -0.8
126,207 - -1.5
126,207 - -1.9
126,240 + -0.7
126,241 - +1.0
126,241 - +1.3
126,241 - +0.6
126,244 + -0.7
126,245 - +1.9
126,245 - +0.0
126,245 - +1.3
126,245 - +0.2
126,245 - +1.6
126,684 + H281DRAFT_02009 0.85 -2.0
126,956 + -0.2
126,957 - +0.0
126,957 - +0.5
126,990 + +1.0
126,990 + +0.5
126,990 + +1.6
126,991 - -0.4
126,991 - +0.1
126,991 - +0.1
127,012 - +0.1
127,057 + +0.8
127,057 + +0.1
127,058 - -0.8
127,058 - +0.6
127,058 - -0.0
127,058 - +0.1
127,058 - +0.4

Or see this region's nucleotide sequence