Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01922

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_01921 and H281DRAFT_01922 are separated by 119 nucleotidesH281DRAFT_01922 and H281DRAFT_01923 overlap by 1 nucleotidesH281DRAFT_01923 and H281DRAFT_01924 overlap by 4 nucleotides H281DRAFT_01921: H281DRAFT_01921 - Kef-type potassium/proton antiporter, CPA2 family, at 38,142 to 40,145 _01921 H281DRAFT_01922: H281DRAFT_01922 - arabinose-5-phosphate isomerase, at 40,265 to 41,314 _01922 H281DRAFT_01923: H281DRAFT_01923 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase), at 41,314 to 41,874 _01923 H281DRAFT_01924: H281DRAFT_01924 - lipopolysaccharide export system protein LptC, at 41,871 to 42,470 _01924 Position (kb) 40 41 42Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 39.641 kb on + strand, within H281DRAFT_01921at 39.642 kb on - strand, within H281DRAFT_01921at 39.695 kb on + strand, within H281DRAFT_01921at 39.717 kb on + strand, within H281DRAFT_01921at 39.809 kb on + strand, within H281DRAFT_01921at 39.809 kb on + strand, within H281DRAFT_01921at 39.810 kb on - strand, within H281DRAFT_01921at 39.810 kb on - strand, within H281DRAFT_01921at 39.810 kb on - strand, within H281DRAFT_01921at 39.876 kb on + strand, within H281DRAFT_01921at 39.877 kb on - strand, within H281DRAFT_01921at 39.877 kb on - strand, within H281DRAFT_01921at 39.877 kb on - strand, within H281DRAFT_01921at 40.048 kb on + strandat 40.230 kb on + strandat 40.232 kb on + strandat 40.232 kb on + strandat 40.319 kb on + strandat 40.321 kb on + strandat 40.933 kb on + strand, within H281DRAFT_01922at 40.933 kb on + strand, within H281DRAFT_01922at 40.933 kb on + strand, within H281DRAFT_01922at 40.933 kb on + strand, within H281DRAFT_01922at 40.933 kb on + strand, within H281DRAFT_01922at 40.933 kb on + strand, within H281DRAFT_01922at 40.933 kb on + strand, within H281DRAFT_01922at 40.937 kb on + strand, within H281DRAFT_01922at 40.937 kb on + strand, within H281DRAFT_01922at 40.937 kb on + strand, within H281DRAFT_01922at 40.937 kb on + strand, within H281DRAFT_01922at 40.938 kb on - strand, within H281DRAFT_01922at 40.938 kb on - strand, within H281DRAFT_01922at 40.938 kb on - strand, within H281DRAFT_01922at 40.938 kb on - strand, within H281DRAFT_01922at 40.938 kb on - strand, within H281DRAFT_01922at 41.387 kb on + strand, within H281DRAFT_01923at 41.387 kb on + strand, within H281DRAFT_01923at 41.566 kb on + strand, within H281DRAFT_01923at 41.566 kb on + strand, within H281DRAFT_01923at 41.566 kb on + strand, within H281DRAFT_01923

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
remove
39,641 + H281DRAFT_01921 0.75 +2.4
39,642 - H281DRAFT_01921 0.75 -2.7
39,695 + H281DRAFT_01921 0.77 +1.9
39,717 + H281DRAFT_01921 0.79 +1.7
39,809 + H281DRAFT_01921 0.83 +2.5
39,809 + H281DRAFT_01921 0.83 +1.5
39,810 - H281DRAFT_01921 0.83 -1.0
39,810 - H281DRAFT_01921 0.83 -1.3
39,810 - H281DRAFT_01921 0.83 -2.5
39,876 + H281DRAFT_01921 0.87 +1.9
39,877 - H281DRAFT_01921 0.87 -3.8
39,877 - H281DRAFT_01921 0.87 -2.3
39,877 - H281DRAFT_01921 0.87 -2.3
40,048 + +4.1
40,230 + +3.1
40,232 + +0.9
40,232 + +2.9
40,319 + +3.4
40,321 + +2.8
40,933 + H281DRAFT_01922 0.64 -0.3
40,933 + H281DRAFT_01922 0.64 -0.5
40,933 + H281DRAFT_01922 0.64 -0.2
40,933 + H281DRAFT_01922 0.64 -0.3
40,933 + H281DRAFT_01922 0.64 -0.7
40,933 + H281DRAFT_01922 0.64 -0.1
40,933 + H281DRAFT_01922 0.64 +0.4
40,937 + H281DRAFT_01922 0.64 +0.4
40,937 + H281DRAFT_01922 0.64 -0.2
40,937 + H281DRAFT_01922 0.64 +0.3
40,937 + H281DRAFT_01922 0.64 -1.1
40,938 - H281DRAFT_01922 0.64 -1.4
40,938 - H281DRAFT_01922 0.64 -1.5
40,938 - H281DRAFT_01922 0.64 -0.6
40,938 - H281DRAFT_01922 0.64 -1.3
40,938 - H281DRAFT_01922 0.64 -3.9
41,387 + H281DRAFT_01923 0.13 +0.8
41,387 + H281DRAFT_01923 0.13 +1.8
41,566 + H281DRAFT_01923 0.45 -0.7
41,566 + H281DRAFT_01923 0.45 +0.6
41,566 + H281DRAFT_01923 0.45 +1.3

Or see this region's nucleotide sequence