Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01167

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_01166 and H281DRAFT_01167 are separated by 252 nucleotides H281DRAFT_01166: H281DRAFT_01166 - p-hydroxybenzoate 3-monooxygenase, at 1,313,188 to 1,314,366 _01166 H281DRAFT_01167: H281DRAFT_01167 - threonine ammonia-lyase, biosynthetic, long form, at 1,314,619 to 1,315,464 _01167 Position (kb) 1314 1315 1316Strain fitness (log2 ratio) -1 0 1at 1313.710 kb on - strand, within H281DRAFT_01166at 1313.998 kb on + strand, within H281DRAFT_01166at 1314.072 kb on - strand, within H281DRAFT_01166at 1314.072 kb on - strand, within H281DRAFT_01166at 1314.479 kb on + strandat 1314.766 kb on - strand, within H281DRAFT_01167at 1314.903 kb on - strand, within H281DRAFT_01167at 1314.903 kb on - strand, within H281DRAFT_01167

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
remove
1,313,710 - H281DRAFT_01166 0.44 +1.0
1,313,998 + H281DRAFT_01166 0.69 -0.0
1,314,072 - H281DRAFT_01166 0.75 -0.4
1,314,072 - H281DRAFT_01166 0.75 +0.8
1,314,479 + +0.0
1,314,766 - H281DRAFT_01167 0.17 -0.5
1,314,903 - H281DRAFT_01167 0.34 -0.7
1,314,903 - H281DRAFT_01167 0.34 -0.2

Or see this region's nucleotide sequence