Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18960 and CSW01_18965 are separated by 137 nucleotides CSW01_18965 and CSW01_18970 are separated by 511 nucleotides CSW01_18970 and CSW01_18975 are separated by 8 nucleotides
CSW01_18960: CSW01_18960 - quercetin 2,3-dioxygenase, at 914,257 to 915,105
_18960
CSW01_18965: CSW01_18965 - DUF1255 domain-containing protein, at 915,243 to 915,557
_18965
CSW01_18970: CSW01_18970 - DUF2850 domain-containing protein, at 916,069 to 916,509
_18970
CSW01_18975: CSW01_18975 - MFS transporter, at 916,518 to 917,822
_18975
Position (kb) 916
917 Strain fitness (log2 ratio) -2
-1
0
1 at 915.315 kb on - strand, within CSW01_18965 at 915.341 kb on + strand, within CSW01_18965 at 915.369 kb on + strand, within CSW01_18965 at 915.385 kb on + strand, within CSW01_18965 at 915.385 kb on + strand, within CSW01_18965 at 915.393 kb on - strand, within CSW01_18965 at 915.393 kb on - strand, within CSW01_18965 at 915.429 kb on + strand, within CSW01_18965 at 915.429 kb on + strand, within CSW01_18965 at 915.454 kb on + strand, within CSW01_18965 at 915.462 kb on + strand, within CSW01_18965 at 915.462 kb on - strand, within CSW01_18965 at 915.499 kb on - strand, within CSW01_18965 at 915.554 kb on - strand at 915.586 kb on - strand at 915.590 kb on + strand at 915.632 kb on + strand at 915.646 kb on + strand at 915.654 kb on - strand at 915.654 kb on - strand at 915.672 kb on - strand at 915.673 kb on - strand at 915.781 kb on - strand at 915.803 kb on - strand at 915.875 kb on - strand at 915.999 kb on + strand at 915.999 kb on + strand at 915.999 kb on + strand at 915.999 kb on + strand at 915.999 kb on + strand at 916.007 kb on - strand at 916.007 kb on - strand at 916.007 kb on - strand at 916.007 kb on - strand at 916.007 kb on - strand at 916.012 kb on - strand at 916.141 kb on - strand, within CSW01_18970 at 916.156 kb on + strand, within CSW01_18970 at 916.392 kb on + strand, within CSW01_18970 at 916.392 kb on + strand, within CSW01_18970 at 916.397 kb on + strand, within CSW01_18970 at 916.397 kb on + strand, within CSW01_18970 at 916.400 kb on - strand, within CSW01_18970 at 916.400 kb on - strand, within CSW01_18970 at 916.424 kb on + strand, within CSW01_18970 at 916.424 kb on + strand, within CSW01_18970 at 916.424 kb on + strand, within CSW01_18970 at 916.432 kb on - strand, within CSW01_18970 at 916.432 kb on - strand, within CSW01_18970 at 916.432 kb on - strand, within CSW01_18970 at 916.467 kb on + strand at 916.467 kb on + strand at 916.467 kb on + strand at 916.467 kb on + strand at 916.475 kb on - strand at 916.475 kb on - strand at 916.475 kb on - strand at 916.526 kb on + strand at 916.561 kb on - strand at 916.592 kb on - strand at 916.600 kb on + strand at 916.608 kb on - strand at 916.613 kb on - strand at 916.736 kb on - strand, within CSW01_18975 at 916.797 kb on + strand, within CSW01_18975 at 916.798 kb on - strand, within CSW01_18975 at 916.838 kb on + strand, within CSW01_18975 at 916.918 kb on + strand, within CSW01_18975 at 916.966 kb on + strand, within CSW01_18975 at 916.966 kb on + strand, within CSW01_18975 at 916.974 kb on - strand, within CSW01_18975 at 916.976 kb on + strand, within CSW01_18975 at 916.976 kb on + strand, within CSW01_18975 at 916.976 kb on + strand, within CSW01_18975 at 916.987 kb on + strand, within CSW01_18975 at 917.204 kb on + strand, within CSW01_18975 at 917.204 kb on + strand, within CSW01_18975 at 917.213 kb on - strand, within CSW01_18975 at 917.273 kb on + strand, within CSW01_18975 at 917.474 kb on - strand, within CSW01_18975 at 917.474 kb on - strand, within CSW01_18975
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 915,315 - CSW01_18965 0.23 +1.0 915,341 + CSW01_18965 0.31 +0.1 915,369 + CSW01_18965 0.40 +0.2 915,385 + CSW01_18965 0.45 +0.1 915,385 + CSW01_18965 0.45 -0.3 915,393 - CSW01_18965 0.48 -0.3 915,393 - CSW01_18965 0.48 +0.7 915,429 + CSW01_18965 0.59 +0.1 915,429 + CSW01_18965 0.59 -0.5 915,454 + CSW01_18965 0.67 -0.1 915,462 + CSW01_18965 0.70 +1.2 915,462 - CSW01_18965 0.70 -1.7 915,499 - CSW01_18965 0.81 -1.0 915,554 - -0.9 915,586 - +0.5 915,590 + -0.4 915,632 + -0.3 915,646 + -0.2 915,654 - +0.3 915,654 - +0.1 915,672 - +1.1 915,673 - +0.2 915,781 - -0.2 915,803 - +0.7 915,875 - +0.2 915,999 + +0.2 915,999 + +0.3 915,999 + -0.6 915,999 + +0.3 915,999 + -0.2 916,007 - -0.3 916,007 - -0.0 916,007 - +0.3 916,007 - -0.4 916,007 - -0.1 916,012 - +0.3 916,141 - CSW01_18970 0.16 +0.7 916,156 + CSW01_18970 0.20 +0.8 916,392 + CSW01_18970 0.73 +0.4 916,392 + CSW01_18970 0.73 +0.4 916,397 + CSW01_18970 0.74 +0.5 916,397 + CSW01_18970 0.74 -0.3 916,400 - CSW01_18970 0.75 +0.1 916,400 - CSW01_18970 0.75 +0.3 916,424 + CSW01_18970 0.80 +0.2 916,424 + CSW01_18970 0.80 -0.6 916,424 + CSW01_18970 0.80 +0.5 916,432 - CSW01_18970 0.82 +1.1 916,432 - CSW01_18970 0.82 +0.3 916,432 - CSW01_18970 0.82 +0.5 916,467 + -0.2 916,467 + -0.1 916,467 + -0.8 916,467 + -0.5 916,475 - +0.5 916,475 - +0.6 916,475 - +0.8 916,526 + +0.0 916,561 - -0.1 916,592 - +0.2 916,600 + +0.0 916,608 - -0.5 916,613 - -0.5 916,736 - CSW01_18975 0.17 +1.0 916,797 + CSW01_18975 0.21 -0.2 916,798 - CSW01_18975 0.21 +0.5 916,838 + CSW01_18975 0.25 -1.9 916,918 + CSW01_18975 0.31 -0.1 916,966 + CSW01_18975 0.34 -0.2 916,966 + CSW01_18975 0.34 -0.0 916,974 - CSW01_18975 0.35 -1.3 916,976 + CSW01_18975 0.35 -0.9 916,976 + CSW01_18975 0.35 +0.6 916,976 + CSW01_18975 0.35 +0.1 916,987 + CSW01_18975 0.36 +0.1 917,204 + CSW01_18975 0.53 -0.9 917,204 + CSW01_18975 0.53 -0.6 917,213 - CSW01_18975 0.53 -0.1 917,273 + CSW01_18975 0.58 -0.9 917,474 - CSW01_18975 0.73 -0.0 917,474 - CSW01_18975 0.73 -0.4
Or see this region's nucleotide sequence