Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18850 and CSW01_18855 are separated by 74 nucleotides CSW01_18855 and CSW01_18860 are separated by 672 nucleotides
CSW01_18850: CSW01_18850 - maltose ABC transporter permease MalF, at 892,546 to 894,120
_18850
CSW01_18855: CSW01_18855 - maltose/maltodextrin ABC transporter substrate-binding protein MalE, at 894,195 to 895,376
_18855
CSW01_18860: CSW01_18860 - maltose/maltodextrin import ATP-binding protein MalK, at 896,049 to 897,170
_18860
Position (kb) 894
895
896 Strain fitness (log2 ratio) -1
0
1
2 at 893.341 kb on - strand, within CSW01_18850 at 893.436 kb on + strand, within CSW01_18850 at 893.458 kb on + strand, within CSW01_18850 at 893.459 kb on + strand, within CSW01_18850 at 893.459 kb on + strand, within CSW01_18850 at 893.459 kb on + strand, within CSW01_18850 at 893.459 kb on + strand, within CSW01_18850 at 893.467 kb on - strand, within CSW01_18850 at 893.467 kb on - strand, within CSW01_18850 at 893.467 kb on - strand, within CSW01_18850 at 893.467 kb on - strand, within CSW01_18850 at 893.635 kb on - strand, within CSW01_18850 at 893.642 kb on - strand, within CSW01_18850 at 893.696 kb on + strand, within CSW01_18850 at 893.752 kb on + strand, within CSW01_18850 at 893.761 kb on + strand, within CSW01_18850 at 893.761 kb on + strand, within CSW01_18850 at 893.781 kb on + strand, within CSW01_18850 at 893.834 kb on + strand, within CSW01_18850 at 893.834 kb on + strand, within CSW01_18850 at 893.834 kb on + strand, within CSW01_18850 at 893.842 kb on - strand, within CSW01_18850 at 893.842 kb on - strand, within CSW01_18850 at 893.861 kb on - strand, within CSW01_18850 at 893.888 kb on + strand, within CSW01_18850 at 893.915 kb on - strand, within CSW01_18850 at 893.931 kb on + strand, within CSW01_18850 at 893.954 kb on - strand, within CSW01_18850 at 893.955 kb on - strand, within CSW01_18850 at 894.041 kb on - strand at 894.041 kb on - strand at 894.070 kb on + strand at 894.089 kb on + strand at 894.089 kb on + strand at 894.089 kb on + strand at 894.089 kb on + strand at 894.097 kb on - strand at 894.097 kb on - strand at 894.097 kb on - strand at 894.097 kb on - strand at 894.097 kb on - strand at 894.097 kb on - strand at 894.097 kb on - strand at 894.103 kb on + strand at 894.103 kb on + strand at 894.103 kb on + strand at 894.103 kb on + strand at 894.111 kb on - strand at 894.111 kb on - strand at 894.111 kb on - strand at 894.111 kb on - strand at 894.111 kb on - strand at 894.225 kb on - strand at 894.408 kb on + strand, within CSW01_18855 at 894.423 kb on - strand, within CSW01_18855 at 894.505 kb on + strand, within CSW01_18855 at 894.513 kb on - strand, within CSW01_18855 at 894.530 kb on - strand, within CSW01_18855 at 894.547 kb on - strand, within CSW01_18855 at 894.643 kb on + strand, within CSW01_18855 at 894.654 kb on + strand, within CSW01_18855 at 894.662 kb on - strand, within CSW01_18855 at 894.672 kb on - strand, within CSW01_18855 at 894.672 kb on - strand, within CSW01_18855 at 894.696 kb on + strand, within CSW01_18855 at 894.748 kb on + strand, within CSW01_18855 at 894.834 kb on - strand, within CSW01_18855 at 894.859 kb on - strand, within CSW01_18855 at 894.913 kb on - strand, within CSW01_18855 at 894.934 kb on + strand, within CSW01_18855 at 894.941 kb on + strand, within CSW01_18855 at 895.128 kb on - strand, within CSW01_18855 at 895.349 kb on + strand at 895.352 kb on + strand at 895.352 kb on - strand at 895.357 kb on - strand at 895.362 kb on - strand at 895.362 kb on - strand at 895.419 kb on + strand at 895.471 kb on + strand at 895.478 kb on + strand at 895.478 kb on + strand at 895.617 kb on - strand at 895.621 kb on + strand at 895.624 kb on - strand at 895.628 kb on + strand at 895.633 kb on - strand at 895.761 kb on + strand at 895.838 kb on - strand at 896.089 kb on + strand at 896.090 kb on - strand at 896.145 kb on - strand at 896.157 kb on + strand at 896.191 kb on + strand, within CSW01_18860 at 896.191 kb on + strand, within CSW01_18860 at 896.210 kb on + strand, within CSW01_18860 at 896.346 kb on - strand, within CSW01_18860 at 896.352 kb on - strand, within CSW01_18860 at 896.354 kb on + strand, within CSW01_18860
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 893,341 - CSW01_18850 0.50 +0.4 893,436 + CSW01_18850 0.57 +1.2 893,458 + CSW01_18850 0.58 +0.1 893,459 + CSW01_18850 0.58 +0.7 893,459 + CSW01_18850 0.58 -0.2 893,459 + CSW01_18850 0.58 +1.3 893,459 + CSW01_18850 0.58 -0.4 893,467 - CSW01_18850 0.58 +0.5 893,467 - CSW01_18850 0.58 +0.2 893,467 - CSW01_18850 0.58 +0.5 893,467 - CSW01_18850 0.58 +0.2 893,635 - CSW01_18850 0.69 -1.5 893,642 - CSW01_18850 0.70 +0.3 893,696 + CSW01_18850 0.73 +0.2 893,752 + CSW01_18850 0.77 -0.1 893,761 + CSW01_18850 0.77 -0.9 893,761 + CSW01_18850 0.77 -0.5 893,781 + CSW01_18850 0.78 +1.1 893,834 + CSW01_18850 0.82 +0.8 893,834 + CSW01_18850 0.82 -0.6 893,834 + CSW01_18850 0.82 -0.2 893,842 - CSW01_18850 0.82 -0.6 893,842 - CSW01_18850 0.82 -0.0 893,861 - CSW01_18850 0.83 +0.6 893,888 + CSW01_18850 0.85 +1.3 893,915 - CSW01_18850 0.87 -0.5 893,931 + CSW01_18850 0.88 -0.4 893,954 - CSW01_18850 0.89 -0.7 893,955 - CSW01_18850 0.89 +0.9 894,041 - +0.0 894,041 - -0.5 894,070 + +0.1 894,089 + +1.2 894,089 + +0.3 894,089 + -0.6 894,089 + -0.4 894,097 - -0.1 894,097 - -0.2 894,097 - +0.0 894,097 - +0.7 894,097 - +0.1 894,097 - +0.3 894,097 - -0.1 894,103 + -0.5 894,103 + -0.0 894,103 + +0.8 894,103 + +0.7 894,111 - +0.9 894,111 - +0.4 894,111 - +0.3 894,111 - +0.6 894,111 - -0.2 894,225 - +2.5 894,408 + CSW01_18855 0.18 +0.1 894,423 - CSW01_18855 0.19 +0.3 894,505 + CSW01_18855 0.26 -0.9 894,513 - CSW01_18855 0.27 -0.1 894,530 - CSW01_18855 0.28 +0.5 894,547 - CSW01_18855 0.30 -0.5 894,643 + CSW01_18855 0.38 +0.4 894,654 + CSW01_18855 0.39 +0.6 894,662 - CSW01_18855 0.40 -0.2 894,672 - CSW01_18855 0.40 -0.3 894,672 - CSW01_18855 0.40 -0.1 894,696 + CSW01_18855 0.42 -0.2 894,748 + CSW01_18855 0.47 -0.1 894,834 - CSW01_18855 0.54 -1.2 894,859 - CSW01_18855 0.56 -0.1 894,913 - CSW01_18855 0.61 +1.6 894,934 + CSW01_18855 0.63 +0.3 894,941 + CSW01_18855 0.63 -0.1 895,128 - CSW01_18855 0.79 -0.4 895,349 + +0.4 895,352 + +0.8 895,352 - -0.6 895,357 - -0.4 895,362 - -0.4 895,362 - +0.3 895,419 + +0.2 895,471 + -0.6 895,478 + -0.1 895,478 + +0.3 895,617 - -1.4 895,621 + -0.3 895,624 - -0.2 895,628 + -0.6 895,633 - -0.1 895,761 + -0.7 895,838 - +0.4 896,089 + +0.5 896,090 - +0.1 896,145 - +0.2 896,157 + +0.1 896,191 + CSW01_18860 0.13 +0.2 896,191 + CSW01_18860 0.13 +0.3 896,210 + CSW01_18860 0.14 +0.4 896,346 - CSW01_18860 0.26 -0.6 896,352 - CSW01_18860 0.27 +1.2 896,354 + CSW01_18860 0.27 -0.1
Or see this region's nucleotide sequence