Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17185

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17180 and CSW01_17185 are separated by 8 nucleotidesCSW01_17185 and CSW01_17190 are separated by 195 nucleotidesCSW01_17190 and CSW01_17195 are separated by 53 nucleotides CSW01_17180: CSW01_17180 - peptide ABC transporter permease, at 525,655 to 526,737 _17180 CSW01_17185: CSW01_17185 - ABC transporter substrate-binding protein, at 526,746 to 528,581 _17185 CSW01_17190: CSW01_17190 - DNA mismatch repair protein MutT, at 528,777 to 529,337 _17190 CSW01_17195: CSW01_17195 - exopolyphosphatase, at 529,391 to 530,323 _17195 Position (kb) 526 527 528 529Strain fitness (log2 ratio) -1 0 1at 525.804 kb on + strand, within CSW01_17180at 525.804 kb on + strand, within CSW01_17180at 525.804 kb on + strand, within CSW01_17180at 525.928 kb on - strand, within CSW01_17180at 526.418 kb on + strand, within CSW01_17180at 526.433 kb on - strand, within CSW01_17180at 526.617 kb on + strand, within CSW01_17180at 526.627 kb on - strand, within CSW01_17180at 526.629 kb on + strandat 526.647 kb on - strandat 526.705 kb on - strandat 526.722 kb on + strandat 526.722 kb on + strandat 526.722 kb on + strandat 526.722 kb on + strandat 526.722 kb on + strandat 526.722 kb on + strandat 526.722 kb on + strandat 526.722 kb on + strandat 526.722 kb on + strandat 526.730 kb on - strandat 526.730 kb on - strandat 526.730 kb on - strandat 526.730 kb on - strandat 526.787 kb on - strandat 526.996 kb on - strand, within CSW01_17185at 527.098 kb on - strand, within CSW01_17185at 527.181 kb on + strand, within CSW01_17185at 527.247 kb on - strand, within CSW01_17185at 527.249 kb on + strand, within CSW01_17185at 527.249 kb on + strand, within CSW01_17185at 527.257 kb on - strand, within CSW01_17185at 527.272 kb on + strand, within CSW01_17185at 527.280 kb on - strand, within CSW01_17185at 527.280 kb on - strand, within CSW01_17185at 527.328 kb on + strand, within CSW01_17185at 527.431 kb on + strand, within CSW01_17185at 527.431 kb on + strand, within CSW01_17185at 527.466 kb on + strand, within CSW01_17185at 527.568 kb on - strand, within CSW01_17185at 527.698 kb on + strand, within CSW01_17185at 527.698 kb on + strand, within CSW01_17185at 527.698 kb on + strand, within CSW01_17185at 527.698 kb on + strand, within CSW01_17185at 527.706 kb on - strand, within CSW01_17185at 527.706 kb on - strand, within CSW01_17185at 527.706 kb on - strand, within CSW01_17185at 527.706 kb on - strand, within CSW01_17185at 527.706 kb on - strand, within CSW01_17185at 527.706 kb on - strand, within CSW01_17185at 527.706 kb on - strand, within CSW01_17185at 527.715 kb on + strand, within CSW01_17185at 527.718 kb on - strand, within CSW01_17185at 527.764 kb on - strand, within CSW01_17185at 527.870 kb on + strand, within CSW01_17185at 527.917 kb on + strand, within CSW01_17185at 528.124 kb on + strand, within CSW01_17185at 528.134 kb on + strand, within CSW01_17185at 528.147 kb on + strand, within CSW01_17185at 528.156 kb on - strand, within CSW01_17185at 528.556 kb on - strandat 528.566 kb on - strandat 528.566 kb on - strandat 528.666 kb on - strandat 528.801 kb on + strandat 528.828 kb on + strandat 528.828 kb on + strandat 528.828 kb on + strandat 528.848 kb on - strand, within CSW01_17190at 528.865 kb on - strand, within CSW01_17190at 528.865 kb on - strand, within CSW01_17190at 528.904 kb on + strand, within CSW01_17190at 528.913 kb on + strand, within CSW01_17190at 529.053 kb on + strand, within CSW01_17190at 529.055 kb on + strand, within CSW01_17190at 529.113 kb on + strand, within CSW01_17190at 529.177 kb on + strand, within CSW01_17190at 529.177 kb on + strand, within CSW01_17190at 529.177 kb on + strand, within CSW01_17190at 529.177 kb on + strand, within CSW01_17190at 529.177 kb on + strand, within CSW01_17190at 529.177 kb on + strand, within CSW01_17190at 529.177 kb on + strand, within CSW01_17190at 529.177 kb on + strand, within CSW01_17190at 529.185 kb on - strand, within CSW01_17190at 529.185 kb on - strand, within CSW01_17190at 529.185 kb on - strand, within CSW01_17190at 529.185 kb on - strand, within CSW01_17190at 529.185 kb on - strand, within CSW01_17190at 529.203 kb on + strand, within CSW01_17190at 529.225 kb on + strand, within CSW01_17190at 529.225 kb on + strand, within CSW01_17190at 529.225 kb on + strand, within CSW01_17190at 529.225 kb on + strand, within CSW01_17190at 529.225 kb on + strand, within CSW01_17190at 529.233 kb on - strand, within CSW01_17190at 529.233 kb on - strand, within CSW01_17190at 529.233 kb on - strand, within CSW01_17190at 529.233 kb on - strand, within CSW01_17190at 529.233 kb on - strand, within CSW01_17190at 529.318 kb on + strandat 529.318 kb on + strandat 529.326 kb on - strandat 529.326 kb on - strandat 529.336 kb on - strandat 529.401 kb on + strandat 529.415 kb on + strandat 529.479 kb on + strandat 529.497 kb on - strand, within CSW01_17195

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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525,804 + CSW01_17180 0.14 -0.2
525,804 + CSW01_17180 0.14 -0.1
525,804 + CSW01_17180 0.14 -0.1
525,928 - CSW01_17180 0.25 -0.1
526,418 + CSW01_17180 0.70 -0.5
526,433 - CSW01_17180 0.72 -0.2
526,617 + CSW01_17180 0.89 +1.7
526,627 - CSW01_17180 0.90 -0.1
526,629 + -0.7
526,647 - +0.6
526,705 - +0.3
526,722 + -0.2
526,722 + +0.4
526,722 + -0.5
526,722 + +0.5
526,722 + -0.8
526,722 + +0.1
526,722 + +0.2
526,722 + +0.8
526,722 + +0.3
526,730 - -0.2
526,730 - -0.5
526,730 - +0.3
526,730 - +0.1
526,787 - +1.3
526,996 - CSW01_17185 0.14 +0.7
527,098 - CSW01_17185 0.19 -0.4
527,181 + CSW01_17185 0.24 +0.2
527,247 - CSW01_17185 0.27 +0.5
527,249 + CSW01_17185 0.27 +0.3
527,249 + CSW01_17185 0.27 +0.6
527,257 - CSW01_17185 0.28 +0.5
527,272 + CSW01_17185 0.29 -0.9
527,280 - CSW01_17185 0.29 +0.5
527,280 - CSW01_17185 0.29 -0.0
527,328 + CSW01_17185 0.32 +1.0
527,431 + CSW01_17185 0.37 +0.3
527,431 + CSW01_17185 0.37 -0.1
527,466 + CSW01_17185 0.39 -0.8
527,568 - CSW01_17185 0.45 +0.8
527,698 + CSW01_17185 0.52 -0.0
527,698 + CSW01_17185 0.52 +0.3
527,698 + CSW01_17185 0.52 +0.5
527,698 + CSW01_17185 0.52 -0.1
527,706 - CSW01_17185 0.52 +0.0
527,706 - CSW01_17185 0.52 +0.7
527,706 - CSW01_17185 0.52 +0.1
527,706 - CSW01_17185 0.52 +0.1
527,706 - CSW01_17185 0.52 -0.1
527,706 - CSW01_17185 0.52 -0.0
527,706 - CSW01_17185 0.52 -0.4
527,715 + CSW01_17185 0.53 +0.6
527,718 - CSW01_17185 0.53 +0.4
527,764 - CSW01_17185 0.55 -0.6
527,870 + CSW01_17185 0.61 +0.7
527,917 + CSW01_17185 0.64 +0.1
528,124 + CSW01_17185 0.75 +0.2
528,134 + CSW01_17185 0.76 +1.2
528,147 + CSW01_17185 0.76 +0.2
528,156 - CSW01_17185 0.77 -1.6
528,556 - -0.2
528,566 - -0.3
528,566 - +0.6
528,666 - -0.1
528,801 + -0.7
528,828 + +0.5
528,828 + -0.3
528,828 + -1.0
528,848 - CSW01_17190 0.13 +0.2
528,865 - CSW01_17190 0.16 +1.5
528,865 - CSW01_17190 0.16 -1.3
528,904 + CSW01_17190 0.23 -0.7
528,913 + CSW01_17190 0.24 +0.0
529,053 + CSW01_17190 0.49 +0.2
529,055 + CSW01_17190 0.50 +0.4
529,113 + CSW01_17190 0.60 +1.0
529,177 + CSW01_17190 0.71 -0.1
529,177 + CSW01_17190 0.71 -0.9
529,177 + CSW01_17190 0.71 -0.1
529,177 + CSW01_17190 0.71 -1.1
529,177 + CSW01_17190 0.71 +0.7
529,177 + CSW01_17190 0.71 -0.4
529,177 + CSW01_17190 0.71 -0.2
529,177 + CSW01_17190 0.71 -0.0
529,185 - CSW01_17190 0.73 -0.1
529,185 - CSW01_17190 0.73 +0.5
529,185 - CSW01_17190 0.73 -0.3
529,185 - CSW01_17190 0.73 +0.3
529,185 - CSW01_17190 0.73 +0.2
529,203 + CSW01_17190 0.76 +0.1
529,225 + CSW01_17190 0.80 +0.1
529,225 + CSW01_17190 0.80 +0.1
529,225 + CSW01_17190 0.80 +0.5
529,225 + CSW01_17190 0.80 -0.2
529,225 + CSW01_17190 0.80 +0.2
529,233 - CSW01_17190 0.81 -0.0
529,233 - CSW01_17190 0.81 -0.2
529,233 - CSW01_17190 0.81 +0.2
529,233 - CSW01_17190 0.81 +0.2
529,233 - CSW01_17190 0.81 +0.0
529,318 + -0.0
529,318 + -0.7
529,326 - -0.4
529,326 - -0.0
529,336 - -0.3
529,401 + -1.1
529,415 + -0.3
529,479 + +0.4
529,497 - CSW01_17195 0.11 -1.1

Or see this region's nucleotide sequence