Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16385

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16375 and CSW01_16380 overlap by 4 nucleotidesCSW01_16380 and CSW01_16385 are separated by 27 nucleotidesCSW01_16385 and CSW01_16390 are separated by 136 nucleotidesCSW01_16390 and CSW01_16395 are separated by 135 nucleotides CSW01_16375: CSW01_16375 - hypothetical protein, at 395,149 to 396,078 _16375 CSW01_16380: CSW01_16380 - DUF3265 domain-containing protein, at 396,075 to 396,185 _16380 CSW01_16385: CSW01_16385 - N-acetyltransferase, at 396,213 to 396,689 _16385 CSW01_16390: CSW01_16390 - lipocalin, at 396,826 to 397,341 _16390 CSW01_16395: CSW01_16395 - type II toxin-antitoxin system RelE/ParE family toxin, at 397,477 to 397,767 _16395 Position (kb) 396 397Strain fitness (log2 ratio) -1 0 1 2at 395.222 kb on - strandat 395.235 kb on - strandat 395.240 kb on - strandat 395.315 kb on - strand, within CSW01_16375at 395.315 kb on - strand, within CSW01_16375at 395.325 kb on - strand, within CSW01_16375at 395.346 kb on - strand, within CSW01_16375at 395.347 kb on + strand, within CSW01_16375at 395.501 kb on - strand, within CSW01_16375at 395.501 kb on - strand, within CSW01_16375at 395.501 kb on - strand, within CSW01_16375at 395.519 kb on + strand, within CSW01_16375at 395.527 kb on - strand, within CSW01_16375at 395.527 kb on - strand, within CSW01_16375at 395.529 kb on + strand, within CSW01_16375at 395.529 kb on + strand, within CSW01_16375at 395.534 kb on + strand, within CSW01_16375at 395.534 kb on + strand, within CSW01_16375at 395.534 kb on + strand, within CSW01_16375at 395.537 kb on - strand, within CSW01_16375at 395.539 kb on + strand, within CSW01_16375at 395.539 kb on + strand, within CSW01_16375at 395.539 kb on + strand, within CSW01_16375at 395.539 kb on + strand, within CSW01_16375at 395.604 kb on + strand, within CSW01_16375at 395.637 kb on - strand, within CSW01_16375at 395.652 kb on + strand, within CSW01_16375at 395.652 kb on + strand, within CSW01_16375at 395.654 kb on + strand, within CSW01_16375at 395.685 kb on + strand, within CSW01_16375at 395.758 kb on - strand, within CSW01_16375at 395.760 kb on + strand, within CSW01_16375at 395.760 kb on - strand, within CSW01_16375at 395.897 kb on - strand, within CSW01_16375at 395.922 kb on + strand, within CSW01_16375at 395.930 kb on - strand, within CSW01_16375at 395.930 kb on - strand, within CSW01_16375at 396.037 kb on - strandat 396.604 kb on + strand, within CSW01_16385at 396.661 kb on - strandat 396.704 kb on - strandat 397.512 kb on - strand, within CSW01_16395at 397.628 kb on + strand, within CSW01_16395

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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395,222 - -0.4
395,235 - -0.3
395,240 - +0.1
395,315 - CSW01_16375 0.18 +0.4
395,315 - CSW01_16375 0.18 +0.2
395,325 - CSW01_16375 0.19 +0.0
395,346 - CSW01_16375 0.21 -0.5
395,347 + CSW01_16375 0.21 -0.0
395,501 - CSW01_16375 0.38 +0.4
395,501 - CSW01_16375 0.38 -0.4
395,501 - CSW01_16375 0.38 -0.4
395,519 + CSW01_16375 0.40 +0.2
395,527 - CSW01_16375 0.41 -0.7
395,527 - CSW01_16375 0.41 -0.8
395,529 + CSW01_16375 0.41 -0.2
395,529 + CSW01_16375 0.41 -0.2
395,534 + CSW01_16375 0.41 +0.1
395,534 + CSW01_16375 0.41 -0.5
395,534 + CSW01_16375 0.41 -0.0
395,537 - CSW01_16375 0.42 +0.3
395,539 + CSW01_16375 0.42 +0.1
395,539 + CSW01_16375 0.42 +0.1
395,539 + CSW01_16375 0.42 +0.2
395,539 + CSW01_16375 0.42 +0.9
395,604 + CSW01_16375 0.49 +0.3
395,637 - CSW01_16375 0.52 +0.0
395,652 + CSW01_16375 0.54 -0.5
395,652 + CSW01_16375 0.54 -0.3
395,654 + CSW01_16375 0.54 -0.2
395,685 + CSW01_16375 0.58 -0.8
395,758 - CSW01_16375 0.65 -0.0
395,760 + CSW01_16375 0.66 -0.0
395,760 - CSW01_16375 0.66 +0.2
395,897 - CSW01_16375 0.80 +0.5
395,922 + CSW01_16375 0.83 -1.0
395,930 - CSW01_16375 0.84 +0.1
395,930 - CSW01_16375 0.84 +0.7
396,037 - -0.0
396,604 + CSW01_16385 0.82 +0.8
396,661 - +0.5
396,704 - -0.7
397,512 - CSW01_16395 0.12 +2.0
397,628 + CSW01_16395 0.52 +0.2

Or see this region's nucleotide sequence