Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16345

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16330 and CSW01_16335 are separated by 197 nucleotidesCSW01_16335 and CSW01_16340 overlap by 86 nucleotidesCSW01_16340 and CSW01_16345 are separated by 193 nucleotidesCSW01_16345 and CSW01_16350 overlap by 8 nucleotidesCSW01_16350 and CSW01_16355 are separated by 25 nucleotidesCSW01_16355 and CSW01_16360 are separated by 27 nucleotidesCSW01_16360 and CSW01_16365 are separated by 187 nucleotides CSW01_16330: CSW01_16330 - DUF2971 domain-containing protein, at 390,696 to 391,553 _16330 CSW01_16335: CSW01_16335 - hypothetical protein, at 391,751 to 391,934 _16335 CSW01_16340: CSW01_16340 - DUF645 domain-containing protein, at 391,849 to 392,028 _16340 CSW01_16345: CSW01_16345 - N-acetyltransferase, at 392,222 to 392,737 _16345 CSW01_16350: CSW01_16350 - plasmid stabilization protein, at 392,730 to 392,801 _16350 CSW01_16355: CSW01_16355 - acetyltransferase, at 392,827 to 393,006 _16355 CSW01_16360: CSW01_16360 - hypothetical protein, at 393,034 to 393,238 _16360 CSW01_16365: CSW01_16365 - LD-carboxypeptidase, at 393,426 to 394,430 _16365 Position (kb) 392 393Strain fitness (log2 ratio) -1 0 1at 391.276 kb on - strand, within CSW01_16330at 391.308 kb on + strand, within CSW01_16330at 391.308 kb on + strand, within CSW01_16330at 391.326 kb on + strand, within CSW01_16330at 391.334 kb on - strand, within CSW01_16330at 391.348 kb on - strand, within CSW01_16330at 391.367 kb on + strand, within CSW01_16330at 391.438 kb on - strand, within CSW01_16330at 391.568 kb on - strandat 392.094 kb on + strandat 392.145 kb on + strandat 392.611 kb on + strand, within CSW01_16345at 392.796 kb on + strandat 392.830 kb on - strandat 393.449 kb on - strandat 393.449 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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391,276 - CSW01_16330 0.68 +0.2
391,308 + CSW01_16330 0.71 -0.2
391,308 + CSW01_16330 0.71 +0.4
391,326 + CSW01_16330 0.73 -0.3
391,334 - CSW01_16330 0.74 -0.0
391,348 - CSW01_16330 0.76 +0.2
391,367 + CSW01_16330 0.78 +0.8
391,438 - CSW01_16330 0.86 +1.1
391,568 - -0.6
392,094 + -0.3
392,145 + -0.4
392,611 + CSW01_16345 0.75 -0.3
392,796 + -0.4
392,830 - -0.1
393,449 - +0.2
393,449 - -0.4

Or see this region's nucleotide sequence