Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16040 and CSW01_16045 are separated by 10 nucleotides CSW01_16045 and CSW01_16050 overlap by 85 nucleotides CSW01_16050 and CSW01_16055 are separated by 176 nucleotides CSW01_16055 and CSW01_16060 overlap by 38 nucleotides CSW01_16060 and CSW01_16065 are separated by 16 nucleotides CSW01_16065 and CSW01_16070 overlap by 19 nucleotides CSW01_16070 and CSW01_16075 are separated by 204 nucleotides
CSW01_16040: CSW01_16040 - type II toxin-antitoxin system RelE/ParE family toxin, at 367,541 to 367,894
_16040
CSW01_16045: CSW01_16045 - transcriptional regulator, at 367,905 to 368,222
_16045
CSW01_16050: CSW01_16050 - DUF3265 domain-containing protein, at 368,138 to 368,329
_16050
CSW01_16055: CSW01_16055 - DUF645 domain-containing protein, at 368,506 to 368,631
_16055
CSW01_16060: CSW01_16060 - Tfp pilus assembly protein, at 368,594 to 368,710
_16060
CSW01_16065: CSW01_16065 - hypothetical protein, at 368,727 to 368,828
_16065
CSW01_16070: CSW01_16070 - isomerase, at 368,810 to 369,649
_16070
CSW01_16075: CSW01_16075 - hypothetical protein, at 369,854 to 370,684
_16075
Position (kb) 368
369
370 Strain fitness (log2 ratio) -1
0
1 at 368.946 kb on + strand, within CSW01_16070 at 369.005 kb on + strand, within CSW01_16070 at 369.021 kb on - strand, within CSW01_16070 at 369.057 kb on - strand, within CSW01_16070 at 369.113 kb on - strand, within CSW01_16070 at 369.238 kb on + strand, within CSW01_16070 at 369.246 kb on - strand, within CSW01_16070 at 369.246 kb on - strand, within CSW01_16070 at 369.324 kb on + strand, within CSW01_16070 at 369.483 kb on + strand, within CSW01_16070 at 369.483 kb on + strand, within CSW01_16070 at 369.488 kb on + strand, within CSW01_16070 at 369.491 kb on - strand, within CSW01_16070 at 369.498 kb on + strand, within CSW01_16070 at 369.586 kb on - strand at 369.611 kb on + strand at 369.713 kb on + strand at 369.713 kb on + strand at 370.015 kb on + strand, within CSW01_16075 at 370.029 kb on - strand, within CSW01_16075 at 370.029 kb on - strand, within CSW01_16075 at 370.029 kb on - strand, within CSW01_16075 at 370.029 kb on - strand, within CSW01_16075 at 370.133 kb on - strand, within CSW01_16075 at 370.435 kb on + strand, within CSW01_16075 at 370.435 kb on + strand, within CSW01_16075 at 370.435 kb on + strand, within CSW01_16075 at 370.443 kb on - strand, within CSW01_16075 at 370.443 kb on - strand, within CSW01_16075 at 370.448 kb on + strand, within CSW01_16075 at 370.550 kb on + strand, within CSW01_16075 at 370.579 kb on - strand, within CSW01_16075 at 370.613 kb on + strand at 370.621 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 368,946 + CSW01_16070 0.16 +1.0 369,005 + CSW01_16070 0.23 +0.6 369,021 - CSW01_16070 0.25 -0.9 369,057 - CSW01_16070 0.29 -0.7 369,113 - CSW01_16070 0.36 -1.5 369,238 + CSW01_16070 0.51 -0.4 369,246 - CSW01_16070 0.52 +0.3 369,246 - CSW01_16070 0.52 -1.2 369,324 + CSW01_16070 0.61 -0.8 369,483 + CSW01_16070 0.80 +0.1 369,483 + CSW01_16070 0.80 -1.1 369,488 + CSW01_16070 0.81 -0.0 369,491 - CSW01_16070 0.81 -0.0 369,498 + CSW01_16070 0.82 -0.9 369,586 - -0.0 369,611 + +0.2 369,713 + +0.1 369,713 + +0.6 370,015 + CSW01_16075 0.19 -0.1 370,029 - CSW01_16075 0.21 -0.5 370,029 - CSW01_16075 0.21 -0.6 370,029 - CSW01_16075 0.21 +0.3 370,029 - CSW01_16075 0.21 +0.2 370,133 - CSW01_16075 0.34 +0.0 370,435 + CSW01_16075 0.70 +0.4 370,435 + CSW01_16075 0.70 +0.2 370,435 + CSW01_16075 0.70 +0.6 370,443 - CSW01_16075 0.71 +0.2 370,443 - CSW01_16075 0.71 -0.0 370,448 + CSW01_16075 0.71 -0.1 370,550 + CSW01_16075 0.84 +0.1 370,579 - CSW01_16075 0.87 -1.2 370,613 + +0.7 370,621 - +0.0
Or see this region's nucleotide sequence