Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_15370 and CSW01_15375 overlap by 1 nucleotides CSW01_15375 and CSW01_15380 are separated by 1 nucleotides CSW01_15380 and CSW01_15385 are separated by 268 nucleotides
CSW01_15370: CSW01_15370 - hypothetical protein, at 304,226 to 304,756
_15370
CSW01_15375: CSW01_15375 - hypothetical protein, at 304,756 to 305,427
_15375
CSW01_15380: CSW01_15380 - hypothetical protein, at 305,429 to 305,779
_15380
CSW01_15385: CSW01_15385 - threonine--tRNA ligase, at 306,048 to 307,976
_15385
Position (kb) 305
306 Strain fitness (log2 ratio) -2
-1
0
1 at 304.518 kb on + strand, within CSW01_15370 at 304.518 kb on + strand, within CSW01_15370 at 304.526 kb on - strand, within CSW01_15370 at 304.526 kb on - strand, within CSW01_15370 at 304.526 kb on - strand, within CSW01_15370 at 304.530 kb on + strand, within CSW01_15370 at 304.550 kb on + strand, within CSW01_15370 at 304.558 kb on - strand, within CSW01_15370 at 304.571 kb on - strand, within CSW01_15370 at 304.610 kb on + strand, within CSW01_15370 at 304.618 kb on - strand, within CSW01_15370 at 304.618 kb on - strand, within CSW01_15370 at 304.640 kb on - strand, within CSW01_15370 at 304.640 kb on - strand, within CSW01_15370 at 304.640 kb on - strand, within CSW01_15370 at 304.640 kb on - strand, within CSW01_15370 at 304.653 kb on - strand, within CSW01_15370 at 304.684 kb on - strand, within CSW01_15370 at 304.771 kb on - strand at 304.778 kb on - strand at 304.790 kb on + strand at 304.955 kb on - strand, within CSW01_15375 at 304.962 kb on + strand, within CSW01_15375 at 305.004 kb on - strand, within CSW01_15375 at 305.024 kb on - strand, within CSW01_15375 at 305.194 kb on + strand, within CSW01_15375 at 305.202 kb on - strand, within CSW01_15375 at 305.202 kb on - strand, within CSW01_15375 at 305.202 kb on - strand, within CSW01_15375 at 305.253 kb on - strand, within CSW01_15375 at 305.253 kb on - strand, within CSW01_15375 at 305.286 kb on + strand, within CSW01_15375 at 305.306 kb on + strand, within CSW01_15375 at 305.313 kb on - strand, within CSW01_15375 at 305.314 kb on - strand, within CSW01_15375 at 305.326 kb on + strand, within CSW01_15375 at 305.456 kb on + strand at 305.473 kb on - strand, within CSW01_15380 at 305.473 kb on - strand, within CSW01_15380 at 305.496 kb on - strand, within CSW01_15380 at 305.569 kb on + strand, within CSW01_15380 at 305.574 kb on + strand, within CSW01_15380 at 305.577 kb on - strand, within CSW01_15380 at 305.582 kb on + strand, within CSW01_15380 at 305.590 kb on - strand, within CSW01_15380 at 305.612 kb on + strand, within CSW01_15380 at 305.640 kb on - strand, within CSW01_15380 at 305.671 kb on - strand, within CSW01_15380 at 305.768 kb on - strand at 305.776 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 304,518 + CSW01_15370 0.55 -0.1 304,518 + CSW01_15370 0.55 +0.5 304,526 - CSW01_15370 0.56 -0.2 304,526 - CSW01_15370 0.56 -0.2 304,526 - CSW01_15370 0.56 +0.4 304,530 + CSW01_15370 0.57 -0.4 304,550 + CSW01_15370 0.61 +0.0 304,558 - CSW01_15370 0.63 +0.5 304,571 - CSW01_15370 0.65 +0.2 304,610 + CSW01_15370 0.72 -0.3 304,618 - CSW01_15370 0.74 +0.4 304,618 - CSW01_15370 0.74 -0.5 304,640 - CSW01_15370 0.78 +0.1 304,640 - CSW01_15370 0.78 +0.3 304,640 - CSW01_15370 0.78 -0.6 304,640 - CSW01_15370 0.78 -0.7 304,653 - CSW01_15370 0.80 +0.1 304,684 - CSW01_15370 0.86 -0.1 304,771 - +0.1 304,778 - +0.4 304,790 + +0.0 304,955 - CSW01_15375 0.30 -0.2 304,962 + CSW01_15375 0.31 -0.5 305,004 - CSW01_15375 0.37 +0.2 305,024 - CSW01_15375 0.40 -0.0 305,194 + CSW01_15375 0.65 -0.1 305,202 - CSW01_15375 0.66 -0.3 305,202 - CSW01_15375 0.66 +0.4 305,202 - CSW01_15375 0.66 -0.2 305,253 - CSW01_15375 0.74 +0.4 305,253 - CSW01_15375 0.74 -0.1 305,286 + CSW01_15375 0.79 +0.2 305,306 + CSW01_15375 0.82 +0.3 305,313 - CSW01_15375 0.83 -0.2 305,314 - CSW01_15375 0.83 -0.7 305,326 + CSW01_15375 0.85 -0.2 305,456 + +0.2 305,473 - CSW01_15380 0.13 -0.4 305,473 - CSW01_15380 0.13 -0.0 305,496 - CSW01_15380 0.19 +0.2 305,569 + CSW01_15380 0.40 -1.0 305,574 + CSW01_15380 0.41 -0.2 305,577 - CSW01_15380 0.42 -0.3 305,582 + CSW01_15380 0.44 -2.0 305,590 - CSW01_15380 0.46 -1.0 305,612 + CSW01_15380 0.52 -0.1 305,640 - CSW01_15380 0.60 -0.2 305,671 - CSW01_15380 0.69 -0.9 305,768 - -0.2 305,776 - +0.3
Or see this region's nucleotide sequence