Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14875

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14870 and CSW01_14875 are separated by 56 nucleotidesCSW01_14875 and CSW01_14880 are separated by 275 nucleotides CSW01_14870: CSW01_14870 - methyl-accepting chemotaxis protein, at 192,829 to 194,763 _14870 CSW01_14875: CSW01_14875 - chromosome partitioning protein ParA, at 194,820 to 195,023 _14875 CSW01_14880: CSW01_14880 - DsbA family protein, at 195,299 to 195,952 _14880 Position (kb) 194 195 196Strain fitness (log2 ratio) -2 -1 0 1 2at 193.844 kb on + strand, within CSW01_14870at 193.852 kb on - strand, within CSW01_14870at 193.852 kb on - strand, within CSW01_14870at 193.930 kb on + strand, within CSW01_14870at 193.987 kb on + strand, within CSW01_14870at 194.009 kb on - strand, within CSW01_14870at 194.061 kb on - strand, within CSW01_14870at 194.205 kb on - strand, within CSW01_14870at 194.256 kb on + strand, within CSW01_14870at 194.287 kb on - strand, within CSW01_14870at 194.374 kb on + strand, within CSW01_14870at 194.374 kb on + strand, within CSW01_14870at 194.494 kb on + strand, within CSW01_14870at 194.494 kb on + strand, within CSW01_14870at 194.530 kb on + strand, within CSW01_14870at 194.596 kb on + strandat 194.622 kb on - strandat 194.624 kb on + strandat 194.624 kb on + strandat 194.750 kb on + strandat 194.750 kb on + strandat 194.750 kb on + strandat 194.758 kb on - strandat 194.758 kb on - strandat 194.758 kb on - strandat 194.758 kb on - strandat 194.760 kb on + strandat 194.812 kb on + strandat 194.886 kb on + strand, within CSW01_14875at 194.959 kb on + strand, within CSW01_14875at 195.024 kb on + strandat 195.048 kb on - strandat 195.186 kb on - strandat 195.434 kb on + strand, within CSW01_14880at 195.444 kb on + strand, within CSW01_14880at 195.444 kb on + strand, within CSW01_14880at 195.444 kb on + strand, within CSW01_14880at 195.444 kb on + strand, within CSW01_14880at 195.452 kb on - strand, within CSW01_14880at 195.452 kb on - strand, within CSW01_14880at 195.452 kb on - strand, within CSW01_14880at 195.452 kb on - strand, within CSW01_14880at 195.452 kb on - strand, within CSW01_14880at 195.452 kb on - strand, within CSW01_14880at 195.452 kb on - strand, within CSW01_14880at 195.452 kb on - strand, within CSW01_14880at 195.452 kb on - strand, within CSW01_14880at 195.452 kb on - strand, within CSW01_14880at 195.456 kb on + strand, within CSW01_14880at 195.502 kb on + strand, within CSW01_14880at 195.502 kb on + strand, within CSW01_14880at 195.533 kb on - strand, within CSW01_14880at 195.560 kb on + strand, within CSW01_14880at 195.593 kb on + strand, within CSW01_14880at 195.594 kb on - strand, within CSW01_14880at 195.594 kb on - strand, within CSW01_14880at 195.594 kb on - strand, within CSW01_14880at 195.601 kb on - strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.751 kb on + strand, within CSW01_14880at 195.753 kb on - strand, within CSW01_14880at 195.753 kb on - strand, within CSW01_14880at 195.753 kb on - strand, within CSW01_14880at 195.753 kb on - strand, within CSW01_14880at 195.787 kb on + strand, within CSW01_14880at 195.829 kb on + strand, within CSW01_14880at 195.909 kb on + strandat 195.909 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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193,844 + CSW01_14870 0.52 +0.3
193,852 - CSW01_14870 0.53 -0.1
193,852 - CSW01_14870 0.53 -0.7
193,930 + CSW01_14870 0.57 -0.0
193,987 + CSW01_14870 0.60 -0.6
194,009 - CSW01_14870 0.61 -0.7
194,061 - CSW01_14870 0.64 -1.2
194,205 - CSW01_14870 0.71 -0.7
194,256 + CSW01_14870 0.74 -0.3
194,287 - CSW01_14870 0.75 -0.1
194,374 + CSW01_14870 0.80 +0.3
194,374 + CSW01_14870 0.80 -0.2
194,494 + CSW01_14870 0.86 +1.0
194,494 + CSW01_14870 0.86 +0.4
194,530 + CSW01_14870 0.88 -1.0
194,596 + +0.4
194,622 - +0.3
194,624 + +1.0
194,624 + -0.3
194,750 + +0.2
194,750 + -0.7
194,750 + +0.3
194,758 - -0.2
194,758 - -1.3
194,758 - -0.1
194,758 - -0.4
194,760 + -1.1
194,812 + -0.4
194,886 + CSW01_14875 0.32 -2.7
194,959 + CSW01_14875 0.68 -0.1
195,024 + -0.4
195,048 - -0.0
195,186 - -0.7
195,434 + CSW01_14880 0.21 +0.2
195,444 + CSW01_14880 0.22 -2.0
195,444 + CSW01_14880 0.22 -0.0
195,444 + CSW01_14880 0.22 -0.1
195,444 + CSW01_14880 0.22 -0.1
195,452 - CSW01_14880 0.23 -0.1
195,452 - CSW01_14880 0.23 +0.4
195,452 - CSW01_14880 0.23 +0.3
195,452 - CSW01_14880 0.23 -0.3
195,452 - CSW01_14880 0.23 -0.4
195,452 - CSW01_14880 0.23 +0.3
195,452 - CSW01_14880 0.23 -0.3
195,452 - CSW01_14880 0.23 +2.3
195,452 - CSW01_14880 0.23 +0.4
195,452 - CSW01_14880 0.23 -0.0
195,456 + CSW01_14880 0.24 +0.3
195,502 + CSW01_14880 0.31 +0.8
195,502 + CSW01_14880 0.31 +0.4
195,533 - CSW01_14880 0.36 +0.1
195,560 + CSW01_14880 0.40 +0.1
195,593 + CSW01_14880 0.45 +0.5
195,594 - CSW01_14880 0.45 -0.7
195,594 - CSW01_14880 0.45 +0.1
195,594 - CSW01_14880 0.45 +0.1
195,601 - CSW01_14880 0.46 -0.4
195,745 + CSW01_14880 0.68 +0.4
195,745 + CSW01_14880 0.68 -0.4
195,745 + CSW01_14880 0.68 +0.4
195,745 + CSW01_14880 0.68 +0.5
195,745 + CSW01_14880 0.68 +0.4
195,745 + CSW01_14880 0.68 +0.4
195,745 + CSW01_14880 0.68 -0.4
195,745 + CSW01_14880 0.68 -0.4
195,745 + CSW01_14880 0.68 +0.1
195,745 + CSW01_14880 0.68 -0.9
195,745 + CSW01_14880 0.68 -0.6
195,745 + CSW01_14880 0.68 +0.5
195,745 + CSW01_14880 0.68 -0.7
195,745 + CSW01_14880 0.68 +0.4
195,745 + CSW01_14880 0.68 -0.1
195,745 + CSW01_14880 0.68 +0.2
195,745 + CSW01_14880 0.68 -0.2
195,751 + CSW01_14880 0.69 +0.2
195,753 - CSW01_14880 0.69 +2.1
195,753 - CSW01_14880 0.69 +2.2
195,753 - CSW01_14880 0.69 +0.1
195,753 - CSW01_14880 0.69 +0.4
195,787 + CSW01_14880 0.75 -0.2
195,829 + CSW01_14880 0.81 -0.0
195,909 + -0.0
195,909 + -0.7

Or see this region's nucleotide sequence