Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14575

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14570 and CSW01_14575 are separated by 2 nucleotidesCSW01_14575 and CSW01_14580 are separated by 2 nucleotidesCSW01_14580 and CSW01_14585 are separated by 6 nucleotides CSW01_14565: CSW01_14565 - type VI secretion system baseplate subunit TssF, at 119,315 to 121,084 _14565 CSW01_14570: CSW01_14570 - type VI secretion system baseplate subunit TssG, at 121,048 to 122,064 _14570 CSW01_14575: CSW01_14575 - type VI secretion system-associated FHA domain protein TagH, at 122,067 to 123,554 _14575 CSW01_14580: CSW01_14580 - type VI secretion system lipoprotein TssJ, at 123,557 to 124,033 _14580 CSW01_14585: CSW01_14585 - type VI secretion system baseplate subunit TssK, at 124,040 to 125,374 _14585 Position (kb) 122 123 124Strain fitness (log2 ratio) -2 -1 0 1at 121.068 kb on - strandat 121.104 kb on - strandat 121.108 kb on + strandat 121.108 kb on + strandat 121.116 kb on - strandat 121.201 kb on - strand, within CSW01_14570at 121.203 kb on + strand, within CSW01_14570at 121.232 kb on + strand, within CSW01_14570at 121.232 kb on + strand, within CSW01_14570at 121.232 kb on + strand, within CSW01_14570at 121.245 kb on - strand, within CSW01_14570at 121.301 kb on + strand, within CSW01_14570at 121.309 kb on - strand, within CSW01_14570at 121.309 kb on - strand, within CSW01_14570at 121.309 kb on - strand, within CSW01_14570at 121.319 kb on + strand, within CSW01_14570at 121.364 kb on - strand, within CSW01_14570at 121.369 kb on - strand, within CSW01_14570at 121.509 kb on - strand, within CSW01_14570at 121.511 kb on + strand, within CSW01_14570at 121.513 kb on + strand, within CSW01_14570at 121.513 kb on + strand, within CSW01_14570at 121.530 kb on + strand, within CSW01_14570at 121.544 kb on + strand, within CSW01_14570at 121.544 kb on + strand, within CSW01_14570at 121.544 kb on + strand, within CSW01_14570at 121.544 kb on + strand, within CSW01_14570at 121.544 kb on + strand, within CSW01_14570at 121.544 kb on + strand, within CSW01_14570at 121.552 kb on - strand, within CSW01_14570at 121.552 kb on - strand, within CSW01_14570at 121.552 kb on - strand, within CSW01_14570at 121.552 kb on - strand, within CSW01_14570at 121.644 kb on + strand, within CSW01_14570at 121.705 kb on - strand, within CSW01_14570at 121.737 kb on + strand, within CSW01_14570at 121.921 kb on + strand, within CSW01_14570at 121.929 kb on - strand, within CSW01_14570at 122.072 kb on - strandat 122.072 kb on - strandat 122.082 kb on - strandat 122.097 kb on + strandat 122.103 kb on - strandat 122.120 kb on - strandat 122.120 kb on - strandat 122.132 kb on - strandat 122.147 kb on + strandat 122.152 kb on - strandat 122.174 kb on - strandat 122.211 kb on + strandat 122.219 kb on - strand, within CSW01_14575at 122.221 kb on + strand, within CSW01_14575at 122.229 kb on + strand, within CSW01_14575at 122.229 kb on - strand, within CSW01_14575at 122.229 kb on - strand, within CSW01_14575at 122.229 kb on - strand, within CSW01_14575at 122.229 kb on - strand, within CSW01_14575at 122.236 kb on + strand, within CSW01_14575at 122.247 kb on - strand, within CSW01_14575at 122.260 kb on + strand, within CSW01_14575at 122.277 kb on - strand, within CSW01_14575at 122.323 kb on + strand, within CSW01_14575at 122.328 kb on + strand, within CSW01_14575at 122.365 kb on + strand, within CSW01_14575at 122.365 kb on + strand, within CSW01_14575at 122.372 kb on + strand, within CSW01_14575at 122.373 kb on - strand, within CSW01_14575at 122.380 kb on - strand, within CSW01_14575at 122.492 kb on - strand, within CSW01_14575at 122.516 kb on + strand, within CSW01_14575at 122.521 kb on + strand, within CSW01_14575at 122.530 kb on + strand, within CSW01_14575at 122.557 kb on - strand, within CSW01_14575at 122.606 kb on + strand, within CSW01_14575at 122.621 kb on + strand, within CSW01_14575at 122.629 kb on - strand, within CSW01_14575at 122.629 kb on - strand, within CSW01_14575at 122.650 kb on - strand, within CSW01_14575at 122.759 kb on + strand, within CSW01_14575at 122.818 kb on - strand, within CSW01_14575at 122.934 kb on + strand, within CSW01_14575at 122.943 kb on + strand, within CSW01_14575at 123.003 kb on + strand, within CSW01_14575at 123.003 kb on + strand, within CSW01_14575at 123.003 kb on + strand, within CSW01_14575at 123.003 kb on + strand, within CSW01_14575at 123.006 kb on - strand, within CSW01_14575at 123.051 kb on + strand, within CSW01_14575at 123.064 kb on - strand, within CSW01_14575at 123.083 kb on + strand, within CSW01_14575at 123.129 kb on + strand, within CSW01_14575at 123.144 kb on + strand, within CSW01_14575at 123.172 kb on + strand, within CSW01_14575at 123.177 kb on + strand, within CSW01_14575at 123.185 kb on - strand, within CSW01_14575at 123.185 kb on - strand, within CSW01_14575at 123.207 kb on + strand, within CSW01_14575at 123.216 kb on + strand, within CSW01_14575at 123.228 kb on + strand, within CSW01_14575at 123.236 kb on + strand, within CSW01_14575at 123.274 kb on - strand, within CSW01_14575at 123.445 kb on + strandat 123.448 kb on + strandat 123.448 kb on + strandat 123.461 kb on - strandat 123.520 kb on - strandat 123.592 kb on - strandat 123.622 kb on + strand, within CSW01_14580at 123.630 kb on - strand, within CSW01_14580at 123.678 kb on + strand, within CSW01_14580at 123.691 kb on + strand, within CSW01_14580at 123.691 kb on + strand, within CSW01_14580at 123.772 kb on - strand, within CSW01_14580at 123.828 kb on + strand, within CSW01_14580at 123.840 kb on + strand, within CSW01_14580at 123.840 kb on + strand, within CSW01_14580at 123.840 kb on + strand, within CSW01_14580at 123.840 kb on + strand, within CSW01_14580at 123.840 kb on + strand, within CSW01_14580at 123.840 kb on + strand, within CSW01_14580at 123.848 kb on - strand, within CSW01_14580at 123.848 kb on - strand, within CSW01_14580at 123.848 kb on - strand, within CSW01_14580at 123.848 kb on - strand, within CSW01_14580at 123.848 kb on - strand, within CSW01_14580at 123.858 kb on - strand, within CSW01_14580at 123.921 kb on + strand, within CSW01_14580at 123.921 kb on + strand, within CSW01_14580at 123.929 kb on - strand, within CSW01_14580at 123.958 kb on + strand, within CSW01_14580at 123.966 kb on - strand, within CSW01_14580at 123.982 kb on - strand, within CSW01_14580at 124.031 kb on - strandat 124.113 kb on + strandat 124.113 kb on + strandat 124.118 kb on + strandat 124.123 kb on + strandat 124.128 kb on + strandat 124.128 kb on + strandat 124.128 kb on + strandat 124.128 kb on + strandat 124.128 kb on + strandat 124.128 kb on + strandat 124.131 kb on - strandat 124.136 kb on - strandat 124.136 kb on - strandat 124.136 kb on - strandat 124.136 kb on - strandat 124.149 kb on - strandat 124.383 kb on + strand, within CSW01_14585at 124.391 kb on - strand, within CSW01_14585at 124.401 kb on - strand, within CSW01_14585at 124.422 kb on + strand, within CSW01_14585at 124.422 kb on + strand, within CSW01_14585at 124.453 kb on + strand, within CSW01_14585at 124.453 kb on + strand, within CSW01_14585at 124.461 kb on - strand, within CSW01_14585at 124.461 kb on - strand, within CSW01_14585at 124.461 kb on - strand, within CSW01_14585at 124.461 kb on - strand, within CSW01_14585at 124.514 kb on - strand, within CSW01_14585

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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121,068 - -0.0
121,104 - -0.4
121,108 + +0.2
121,108 + -0.5
121,116 - +0.5
121,201 - CSW01_14570 0.15 -0.0
121,203 + CSW01_14570 0.15 -0.8
121,232 + CSW01_14570 0.18 +0.5
121,232 + CSW01_14570 0.18 -0.5
121,232 + CSW01_14570 0.18 +0.3
121,245 - CSW01_14570 0.19 +0.4
121,301 + CSW01_14570 0.25 +0.6
121,309 - CSW01_14570 0.26 +0.4
121,309 - CSW01_14570 0.26 -0.3
121,309 - CSW01_14570 0.26 -0.0
121,319 + CSW01_14570 0.27 +1.0
121,364 - CSW01_14570 0.31 -0.2
121,369 - CSW01_14570 0.32 +0.1
121,509 - CSW01_14570 0.45 -0.1
121,511 + CSW01_14570 0.46 +0.8
121,513 + CSW01_14570 0.46 +1.0
121,513 + CSW01_14570 0.46 +0.2
121,530 + CSW01_14570 0.47 -1.2
121,544 + CSW01_14570 0.49 +0.2
121,544 + CSW01_14570 0.49 -0.6
121,544 + CSW01_14570 0.49 -1.4
121,544 + CSW01_14570 0.49 +0.3
121,544 + CSW01_14570 0.49 -0.0
121,544 + CSW01_14570 0.49 -0.0
121,552 - CSW01_14570 0.50 +0.3
121,552 - CSW01_14570 0.50 +1.5
121,552 - CSW01_14570 0.50 +0.1
121,552 - CSW01_14570 0.50 -0.2
121,644 + CSW01_14570 0.59 -1.0
121,705 - CSW01_14570 0.65 -0.3
121,737 + CSW01_14570 0.68 -1.0
121,921 + CSW01_14570 0.86 +0.1
121,929 - CSW01_14570 0.87 +0.6
122,072 - -0.4
122,072 - +0.5
122,082 - +0.1
122,097 + +0.8
122,103 - +1.0
122,120 - -0.2
122,120 - -0.1
122,132 - +1.1
122,147 + -0.2
122,152 - +1.5
122,174 - +0.7
122,211 + -0.1
122,219 - CSW01_14575 0.10 -1.0
122,221 + CSW01_14575 0.10 +0.1
122,229 + CSW01_14575 0.11 +0.3
122,229 - CSW01_14575 0.11 -0.5
122,229 - CSW01_14575 0.11 -0.4
122,229 - CSW01_14575 0.11 +0.6
122,229 - CSW01_14575 0.11 -0.3
122,236 + CSW01_14575 0.11 +0.7
122,247 - CSW01_14575 0.12 +0.2
122,260 + CSW01_14575 0.13 +0.2
122,277 - CSW01_14575 0.14 -0.3
122,323 + CSW01_14575 0.17 +0.1
122,328 + CSW01_14575 0.18 +0.3
122,365 + CSW01_14575 0.20 +0.4
122,365 + CSW01_14575 0.20 +1.3
122,372 + CSW01_14575 0.20 -0.4
122,373 - CSW01_14575 0.21 +0.3
122,380 - CSW01_14575 0.21 -0.5
122,492 - CSW01_14575 0.29 +0.1
122,516 + CSW01_14575 0.30 -0.7
122,521 + CSW01_14575 0.31 +0.3
122,530 + CSW01_14575 0.31 +0.1
122,557 - CSW01_14575 0.33 +0.1
122,606 + CSW01_14575 0.36 +0.6
122,621 + CSW01_14575 0.37 +0.7
122,629 - CSW01_14575 0.38 -0.2
122,629 - CSW01_14575 0.38 +0.5
122,650 - CSW01_14575 0.39 +0.4
122,759 + CSW01_14575 0.47 -0.6
122,818 - CSW01_14575 0.50 +0.2
122,934 + CSW01_14575 0.58 +0.5
122,943 + CSW01_14575 0.59 +0.8
123,003 + CSW01_14575 0.63 +0.6
123,003 + CSW01_14575 0.63 +0.1
123,003 + CSW01_14575 0.63 -0.1
123,003 + CSW01_14575 0.63 +0.5
123,006 - CSW01_14575 0.63 +0.1
123,051 + CSW01_14575 0.66 +0.6
123,064 - CSW01_14575 0.67 +0.4
123,083 + CSW01_14575 0.68 +1.0
123,129 + CSW01_14575 0.71 +0.8
123,144 + CSW01_14575 0.72 +0.3
123,172 + CSW01_14575 0.74 -0.5
123,177 + CSW01_14575 0.75 +0.1
123,185 - CSW01_14575 0.75 -0.3
123,185 - CSW01_14575 0.75 +0.1
123,207 + CSW01_14575 0.77 -0.9
123,216 + CSW01_14575 0.77 -0.1
123,228 + CSW01_14575 0.78 -0.6
123,236 + CSW01_14575 0.79 +0.1
123,274 - CSW01_14575 0.81 -0.6
123,445 + +0.2
123,448 + +0.1
123,448 + -0.3
123,461 - +1.1
123,520 - -0.2
123,592 - +0.7
123,622 + CSW01_14580 0.14 +0.4
123,630 - CSW01_14580 0.15 +0.0
123,678 + CSW01_14580 0.25 -0.0
123,691 + CSW01_14580 0.28 -0.7
123,691 + CSW01_14580 0.28 +0.2
123,772 - CSW01_14580 0.45 +1.0
123,828 + CSW01_14580 0.57 +0.3
123,840 + CSW01_14580 0.59 -0.1
123,840 + CSW01_14580 0.59 +0.4
123,840 + CSW01_14580 0.59 -0.0
123,840 + CSW01_14580 0.59 +0.4
123,840 + CSW01_14580 0.59 -0.0
123,840 + CSW01_14580 0.59 -2.5
123,848 - CSW01_14580 0.61 +0.1
123,848 - CSW01_14580 0.61 +0.4
123,848 - CSW01_14580 0.61 -0.2
123,848 - CSW01_14580 0.61 -0.1
123,848 - CSW01_14580 0.61 +0.2
123,858 - CSW01_14580 0.63 +0.3
123,921 + CSW01_14580 0.76 +0.4
123,921 + CSW01_14580 0.76 -0.1
123,929 - CSW01_14580 0.78 -0.6
123,958 + CSW01_14580 0.84 +0.6
123,966 - CSW01_14580 0.86 +0.1
123,982 - CSW01_14580 0.89 -0.2
124,031 - -0.3
124,113 + +0.3
124,113 + +0.1
124,118 + +0.3
124,123 + +0.3
124,128 + +0.3
124,128 + -0.3
124,128 + +0.4
124,128 + +0.0
124,128 + +0.3
124,128 + -0.9
124,131 - -0.4
124,136 - -0.4
124,136 - +0.2
124,136 - -0.2
124,136 - -0.3
124,149 - +0.6
124,383 + CSW01_14585 0.26 -1.3
124,391 - CSW01_14585 0.26 +0.1
124,401 - CSW01_14585 0.27 +0.4
124,422 + CSW01_14585 0.29 +0.5
124,422 + CSW01_14585 0.29 +0.2
124,453 + CSW01_14585 0.31 -0.0
124,453 + CSW01_14585 0.31 +0.4
124,461 - CSW01_14585 0.32 +0.7
124,461 - CSW01_14585 0.32 -0.5
124,461 - CSW01_14585 0.32 -0.1
124,461 - CSW01_14585 0.32 -0.1
124,514 - CSW01_14585 0.36 -2.2

Or see this region's nucleotide sequence