Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14195

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14185 and CSW01_14190 are separated by 21 nucleotidesCSW01_14190 and CSW01_14195 are separated by 89 nucleotidesCSW01_14195 and CSW01_14200 are separated by 0 nucleotidesCSW01_14200 and CSW01_14205 are separated by 120 nucleotides CSW01_14185: CSW01_14185 - chitinase, at 33,034 to 35,583 _14185 CSW01_14190: CSW01_14190 - hypothetical protein, at 35,605 to 35,859 _14190 CSW01_14195: CSW01_14195 - IclR family transcriptional regulator, at 35,949 to 36,683 _14195 CSW01_14200: CSW01_14200 - arginase, at 36,684 to 37,526 _14200 CSW01_14205: CSW01_14205 - methyl-accepting chemotaxis protein, at 37,647 to 39,212 _14205 Position (kb) 35 36 37Strain fitness (log2 ratio) -2 -1 0 1at 34.954 kb on - strand, within CSW01_14185at 34.957 kb on + strand, within CSW01_14185at 34.982 kb on + strand, within CSW01_14185at 34.990 kb on - strand, within CSW01_14185at 34.990 kb on - strand, within CSW01_14185at 35.063 kb on - strand, within CSW01_14185at 35.078 kb on + strand, within CSW01_14185at 35.091 kb on - strand, within CSW01_14185at 35.117 kb on - strand, within CSW01_14185at 35.124 kb on - strand, within CSW01_14185at 35.160 kb on + strand, within CSW01_14185at 35.179 kb on - strand, within CSW01_14185at 35.189 kb on + strand, within CSW01_14185at 35.210 kb on - strand, within CSW01_14185at 35.307 kb on - strand, within CSW01_14185at 35.316 kb on - strand, within CSW01_14185at 35.365 kb on + strandat 35.373 kb on - strandat 35.442 kb on + strandat 35.442 kb on + strandat 35.450 kb on - strandat 35.450 kb on - strandat 35.466 kb on + strandat 35.499 kb on - strandat 35.535 kb on + strandat 35.561 kb on - strandat 35.570 kb on + strandat 35.570 kb on + strandat 35.591 kb on + strandat 35.591 kb on + strandat 35.591 kb on + strandat 35.599 kb on - strandat 35.599 kb on - strandat 35.599 kb on - strandat 35.601 kb on + strandat 35.637 kb on + strand, within CSW01_14190at 35.637 kb on + strand, within CSW01_14190at 35.645 kb on - strand, within CSW01_14190at 35.647 kb on + strand, within CSW01_14190at 35.647 kb on + strand, within CSW01_14190at 35.657 kb on + strand, within CSW01_14190at 35.704 kb on - strand, within CSW01_14190at 35.777 kb on + strand, within CSW01_14190at 35.785 kb on - strand, within CSW01_14190at 35.926 kb on + strandat 35.938 kb on + strandat 36.225 kb on + strand, within CSW01_14195at 36.225 kb on + strand, within CSW01_14195at 36.225 kb on + strand, within CSW01_14195at 36.233 kb on - strand, within CSW01_14195at 36.233 kb on - strand, within CSW01_14195at 36.233 kb on - strand, within CSW01_14195at 36.235 kb on - strand, within CSW01_14195at 36.365 kb on + strand, within CSW01_14195at 36.365 kb on + strand, within CSW01_14195at 36.373 kb on - strand, within CSW01_14195at 36.373 kb on - strand, within CSW01_14195at 36.406 kb on - strand, within CSW01_14195at 36.455 kb on - strand, within CSW01_14195at 36.493 kb on + strand, within CSW01_14195at 36.542 kb on + strand, within CSW01_14195at 36.570 kb on + strand, within CSW01_14195at 36.578 kb on - strand, within CSW01_14195at 36.620 kb on - strandat 36.670 kb on - strandat 36.679 kb on + strandat 36.679 kb on + strandat 36.701 kb on + strandat 36.714 kb on + strandat 36.800 kb on + strand, within CSW01_14200at 36.961 kb on - strand, within CSW01_14200at 37.014 kb on + strand, within CSW01_14200at 37.057 kb on + strand, within CSW01_14200at 37.065 kb on - strand, within CSW01_14200at 37.065 kb on - strand, within CSW01_14200at 37.065 kb on - strand, within CSW01_14200at 37.099 kb on + strand, within CSW01_14200at 37.136 kb on + strand, within CSW01_14200at 37.159 kb on - strand, within CSW01_14200at 37.161 kb on + strand, within CSW01_14200at 37.161 kb on + strand, within CSW01_14200at 37.161 kb on + strand, within CSW01_14200at 37.164 kb on - strand, within CSW01_14200at 37.169 kb on - strand, within CSW01_14200at 37.172 kb on + strand, within CSW01_14200at 37.180 kb on + strand, within CSW01_14200at 37.180 kb on + strand, within CSW01_14200at 37.180 kb on + strand, within CSW01_14200at 37.181 kb on - strand, within CSW01_14200at 37.187 kb on - strand, within CSW01_14200at 37.188 kb on - strand, within CSW01_14200at 37.219 kb on + strand, within CSW01_14200at 37.219 kb on + strand, within CSW01_14200at 37.219 kb on + strand, within CSW01_14200at 37.219 kb on + strand, within CSW01_14200at 37.219 kb on + strand, within CSW01_14200at 37.219 kb on + strand, within CSW01_14200at 37.219 kb on + strand, within CSW01_14200at 37.219 kb on + strand, within CSW01_14200at 37.219 kb on + strand, within CSW01_14200at 37.227 kb on - strand, within CSW01_14200at 37.227 kb on - strand, within CSW01_14200at 37.227 kb on - strand, within CSW01_14200at 37.227 kb on - strand, within CSW01_14200at 37.227 kb on - strand, within CSW01_14200at 37.227 kb on - strand, within CSW01_14200at 37.227 kb on - strand, within CSW01_14200at 37.227 kb on - strand, within CSW01_14200at 37.227 kb on - strand, within CSW01_14200at 37.227 kb on - strand, within CSW01_14200at 37.227 kb on - strand, within CSW01_14200at 37.227 kb on - strand, within CSW01_14200at 37.227 kb on - strand, within CSW01_14200at 37.278 kb on + strand, within CSW01_14200at 37.314 kb on - strand, within CSW01_14200at 37.314 kb on - strand, within CSW01_14200at 37.356 kb on + strand, within CSW01_14200at 37.356 kb on - strand, within CSW01_14200at 37.364 kb on - strand, within CSW01_14200at 37.376 kb on + strand, within CSW01_14200at 37.381 kb on - strand, within CSW01_14200at 37.421 kb on - strand, within CSW01_14200at 37.461 kb on + strandat 37.474 kb on - strandat 37.516 kb on + strandat 37.524 kb on - strandat 37.579 kb on - strandat 37.581 kb on - strandat 37.588 kb on + strandat 37.589 kb on - strandat 37.677 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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34,954 - CSW01_14185 0.75 -0.1
34,957 + CSW01_14185 0.75 +0.5
34,982 + CSW01_14185 0.76 +0.3
34,990 - CSW01_14185 0.77 -1.0
34,990 - CSW01_14185 0.77 +0.7
35,063 - CSW01_14185 0.80 -0.5
35,078 + CSW01_14185 0.80 -0.9
35,091 - CSW01_14185 0.81 -0.3
35,117 - CSW01_14185 0.82 -0.8
35,124 - CSW01_14185 0.82 +0.0
35,160 + CSW01_14185 0.83 +0.5
35,179 - CSW01_14185 0.84 +0.5
35,189 + CSW01_14185 0.85 +0.5
35,210 - CSW01_14185 0.85 -1.6
35,307 - CSW01_14185 0.89 -0.2
35,316 - CSW01_14185 0.89 +0.0
35,365 + -0.3
35,373 - -0.8
35,442 + -0.3
35,442 + -1.7
35,450 - +1.5
35,450 - -0.0
35,466 + -0.2
35,499 - +1.0
35,535 + -0.5
35,561 - +0.2
35,570 + +0.8
35,570 + +0.2
35,591 + -0.0
35,591 + +0.1
35,591 + -0.5
35,599 - +0.2
35,599 - +0.5
35,599 - -0.6
35,601 + +0.0
35,637 + CSW01_14190 0.13 -0.4
35,637 + CSW01_14190 0.13 -0.3
35,645 - CSW01_14190 0.16 -0.2
35,647 + CSW01_14190 0.16 +0.1
35,647 + CSW01_14190 0.16 +0.4
35,657 + CSW01_14190 0.20 -0.2
35,704 - CSW01_14190 0.39 +0.3
35,777 + CSW01_14190 0.67 +0.0
35,785 - CSW01_14190 0.71 -0.1
35,926 + +0.7
35,938 + +0.2
36,225 + CSW01_14195 0.38 -0.5
36,225 + CSW01_14195 0.38 +1.0
36,225 + CSW01_14195 0.38 +0.2
36,233 - CSW01_14195 0.39 +0.6
36,233 - CSW01_14195 0.39 -0.2
36,233 - CSW01_14195 0.39 +0.6
36,235 - CSW01_14195 0.39 +1.4
36,365 + CSW01_14195 0.57 +0.6
36,365 + CSW01_14195 0.57 +0.3
36,373 - CSW01_14195 0.58 +0.6
36,373 - CSW01_14195 0.58 +0.4
36,406 - CSW01_14195 0.62 +0.2
36,455 - CSW01_14195 0.69 -0.2
36,493 + CSW01_14195 0.74 -0.5
36,542 + CSW01_14195 0.81 +0.4
36,570 + CSW01_14195 0.84 +0.4
36,578 - CSW01_14195 0.86 +0.2
36,620 - -0.2
36,670 - +0.4
36,679 + +1.3
36,679 + -0.0
36,701 + -0.7
36,714 + -0.1
36,800 + CSW01_14200 0.14 -0.3
36,961 - CSW01_14200 0.33 -0.3
37,014 + CSW01_14200 0.39 +0.5
37,057 + CSW01_14200 0.44 +0.3
37,065 - CSW01_14200 0.45 +0.1
37,065 - CSW01_14200 0.45 -1.0
37,065 - CSW01_14200 0.45 -0.2
37,099 + CSW01_14200 0.49 +0.7
37,136 + CSW01_14200 0.54 -0.4
37,159 - CSW01_14200 0.56 +0.2
37,161 + CSW01_14200 0.57 -0.2
37,161 + CSW01_14200 0.57 +0.8
37,161 + CSW01_14200 0.57 +0.1
37,164 - CSW01_14200 0.57 -0.3
37,169 - CSW01_14200 0.58 +0.4
37,172 + CSW01_14200 0.58 +0.5
37,180 + CSW01_14200 0.59 +0.6
37,180 + CSW01_14200 0.59 -0.0
37,180 + CSW01_14200 0.59 -0.3
37,181 - CSW01_14200 0.59 -0.3
37,187 - CSW01_14200 0.60 -0.2
37,188 - CSW01_14200 0.60 +0.2
37,219 + CSW01_14200 0.63 -0.3
37,219 + CSW01_14200 0.63 +0.0
37,219 + CSW01_14200 0.63 -0.2
37,219 + CSW01_14200 0.63 -1.8
37,219 + CSW01_14200 0.63 -1.0
37,219 + CSW01_14200 0.63 +0.4
37,219 + CSW01_14200 0.63 -0.4
37,219 + CSW01_14200 0.63 +0.3
37,219 + CSW01_14200 0.63 -0.3
37,227 - CSW01_14200 0.64 +0.3
37,227 - CSW01_14200 0.64 -0.3
37,227 - CSW01_14200 0.64 +0.5
37,227 - CSW01_14200 0.64 +0.8
37,227 - CSW01_14200 0.64 +0.2
37,227 - CSW01_14200 0.64 +0.1
37,227 - CSW01_14200 0.64 +1.2
37,227 - CSW01_14200 0.64 +0.1
37,227 - CSW01_14200 0.64 +0.1
37,227 - CSW01_14200 0.64 +0.5
37,227 - CSW01_14200 0.64 -0.2
37,227 - CSW01_14200 0.64 -0.4
37,227 - CSW01_14200 0.64 -0.4
37,278 + CSW01_14200 0.70 -0.2
37,314 - CSW01_14200 0.75 +0.6
37,314 - CSW01_14200 0.75 -0.2
37,356 + CSW01_14200 0.80 +0.5
37,356 - CSW01_14200 0.80 -0.5
37,364 - CSW01_14200 0.81 +0.3
37,376 + CSW01_14200 0.82 -0.1
37,381 - CSW01_14200 0.83 +0.2
37,421 - CSW01_14200 0.87 -0.4
37,461 + +0.2
37,474 - -0.5
37,516 + -0.6
37,524 - +0.3
37,579 - -0.1
37,581 - -0.1
37,588 + +0.3
37,589 - +0.4
37,677 + -1.9

Or see this region's nucleotide sequence