Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13625

Experiment: NoPhageControl

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NoPhageControl
2,896,980	+		CSW01_13620	0.41	+0.4
2,897,051	+		CSW01_13620	0.46	-0.1
2,897,054	-		CSW01_13620	0.46	+0.4
2,897,061	+		CSW01_13620	0.47	-0.7
2,897,069	-		CSW01_13620	0.47	-0.1
2,897,069	-		CSW01_13620	0.47	-0.4
2,897,069	-		CSW01_13620	0.47	-1.1
2,897,069	-		CSW01_13620	0.47	+0.5
2,897,069	-		CSW01_13620	0.47	-0.4
2,897,071	+		CSW01_13620	0.48	-0.5
2,897,071	+		CSW01_13620	0.48	-1.5
2,897,071	-		CSW01_13620	0.48	-0.3
2,897,116	+		CSW01_13620	0.51	+0.2
2,897,116	+		CSW01_13620	0.51	+1.2
2,897,116	+		CSW01_13620	0.51	+0.2
2,897,116	+		CSW01_13620	0.51	+1.1
2,897,121	+		CSW01_13620	0.51	+0.8
2,897,121	+		CSW01_13620	0.51	+0.2
2,897,124	-		CSW01_13620	0.51	+0.8
2,897,124	-		CSW01_13620	0.51	-0.2
2,897,124	-		CSW01_13620	0.51	+0.0
2,897,124	-		CSW01_13620	0.51	+0.3
2,897,129	-		CSW01_13620	0.52	+0.3
2,897,129	-		CSW01_13620	0.52	-0.8
2,897,129	-		CSW01_13620	0.52	+0.4
2,897,151	-		CSW01_13620	0.53	-0.9
2,897,174	+		CSW01_13620	0.55	+0.0
2,897,221	+		CSW01_13620	0.58	+0.9
2,897,221	+		CSW01_13620	0.58	-0.1
2,897,221	+		CSW01_13620	0.58	+0.4
2,897,309	+		CSW01_13620	0.64	+1.1
2,897,309	+		CSW01_13620	0.64	-0.3
2,897,312	-		CSW01_13620	0.64	+0.1
2,897,317	-		CSW01_13620	0.65	-0.2
2,897,317	-		CSW01_13620	0.65	-0.7
2,897,322	-		CSW01_13620	0.65	+0.1
2,897,322	-		CSW01_13620	0.65	+0.1
2,897,322	-		CSW01_13620	0.65	-1.2
2,897,322	-		CSW01_13620	0.65	-0.1
2,897,322	-		CSW01_13620	0.65	-0.2
2,897,322	-		CSW01_13620	0.65	-0.1
2,897,326	+		CSW01_13620	0.65	+0.3
2,897,331	+		CSW01_13620	0.65	+0.8
2,897,339	-		CSW01_13620	0.66	-1.2
2,897,358	-		CSW01_13620	0.67	-0.5
2,897,444	-		CSW01_13620	0.73	-0.8
2,897,455	+		CSW01_13620	0.74	-1.0
2,897,455	+		CSW01_13620	0.74	+0.3
2,897,463	-		CSW01_13620	0.75	-0.6
2,897,486	-		CSW01_13620	0.76	-0.6
2,897,539	-		CSW01_13620	0.80	-1.3
2,897,546	+		CSW01_13620	0.80	-0.5
2,897,557	+		CSW01_13620	0.81	+2.4
2,897,565	-		CSW01_13620	0.82	-0.2
2,897,565	-		CSW01_13620	0.82	-1.3
2,897,565	-		CSW01_13620	0.82	-0.7
2,897,565	-		CSW01_13620	0.82	-0.4
2,897,632	-		CSW01_13620	0.86	+0.1
2,897,657	+		CSW01_13620	0.88	-1.3
2,897,665	-		CSW01_13620	0.88	+0.5
2,897,672	+		CSW01_13620	0.89	+0.1
2,897,678	+		CSW01_13620	0.89	-0.3
2,897,680	-		CSW01_13620	0.90	-0.5
2,897,686	-				+0.1
2,897,696	+				+1.1
2,897,728	+				-2.1
2,897,736	-				-0.2
2,897,755	+				-0.1
2,897,763	-				-1.1
2,897,773	-				-0.8
2,897,792	-				-0.9
2,897,847	-				+0.1
2,897,867	-				+0.2
2,897,986	-				-0.4
2,897,997	+				-0.4
2,898,057	-				-0.7
2,898,065	+				+0.0
2,898,065	+				-0.1
2,898,073	-				-0.0
2,898,096	-		CSW01_13625	0.10	+0.1
2,898,103	-		CSW01_13625	0.11	-0.6
2,898,228	-		CSW01_13625	0.21	-0.4
2,898,275	+		CSW01_13625	0.24	-0.5
2,898,275	+		CSW01_13625	0.24	+0.8
2,898,275	+		CSW01_13625	0.24	-0.7
2,898,275	+		CSW01_13625	0.24	+1.1
2,898,275	+		CSW01_13625	0.24	-0.6
2,898,275	+		CSW01_13625	0.24	-2.2
2,898,283	-		CSW01_13625	0.25	+0.2
2,898,283	-		CSW01_13625	0.25	+0.5
2,898,283	-		CSW01_13625	0.25	-0.3
2,898,334	+		CSW01_13625	0.29	-0.4
2,898,357	+		CSW01_13625	0.30	-0.1
2,898,456	-		CSW01_13625	0.38	-0.6
2,898,458	+		CSW01_13625	0.38	+0.1
2,898,458	+		CSW01_13625	0.38	+0.2
2,898,458	+		CSW01_13625	0.38	-0.9
2,898,458	+		CSW01_13625	0.38	-0.8
2,898,458	+		CSW01_13625	0.38	-0.3
2,898,458	+		CSW01_13625	0.38	-0.7
2,898,466	-		CSW01_13625	0.39	-0.2
2,898,466	-		CSW01_13625	0.39	-1.1
2,898,466	-		CSW01_13625	0.39	-0.2
2,898,466	-		CSW01_13625	0.39	-1.1
2,898,466	-		CSW01_13625	0.39	-0.1
2,898,466	-		CSW01_13625	0.39	-0.6
2,898,466	-		CSW01_13625	0.39	-0.2
2,898,466	-		CSW01_13625	0.39	+0.6
2,898,466	-		CSW01_13625	0.39	-0.6
2,898,492	-		CSW01_13625	0.41	+0.2
2,898,527	+		CSW01_13625	0.43	-0.3
2,898,527	+		CSW01_13625	0.43	-0.5
2,898,704	+		CSW01_13625	0.57	-0.3
2,898,762	-		CSW01_13625	0.61	-0.6
2,898,787	-		CSW01_13625	0.63	-1.4
2,898,787	-		CSW01_13625	0.63	+0.4
2,898,787	-		CSW01_13625	0.63	+0.0
2,898,798	+		CSW01_13625	0.64	+1.2
2,898,798	+		CSW01_13625	0.64	-0.2
2,898,806	-		CSW01_13625	0.65	+0.2
2,898,806	-		CSW01_13625	0.65	+0.6
2,898,806	-		CSW01_13625	0.65	-0.1
2,898,858	-		CSW01_13625	0.69	-0.0
2,898,867	+		CSW01_13625	0.69	+0.2
2,898,873	+		CSW01_13625	0.70	+0.1
2,898,875	-		CSW01_13625	0.70	-1.3
2,898,881	-		CSW01_13625	0.70	-0.9
2,898,881	-		CSW01_13625	0.70	+0.3
2,898,884	+		CSW01_13625	0.71	-0.6
2,898,927	+		CSW01_13625	0.74	-0.6
2,898,927	+		CSW01_13625	0.74	-0.0
2,898,965	+		CSW01_13625	0.77	-0.3
2,898,970	+		CSW01_13625	0.77	-0.4
2,898,983	+		CSW01_13625	0.78	-0.8
2,898,993	+		CSW01_13625	0.79	+1.5
2,898,996	-		CSW01_13625	0.79	-2.6
2,899,001	-		CSW01_13625	0.80	+0.1
2,899,016	+		CSW01_13625	0.81	-0.2
2,899,016	+		CSW01_13625	0.81	+0.1
2,899,049	+		CSW01_13625	0.83	+0.0
2,899,057	-		CSW01_13625	0.84	+0.5
2,899,057	-		CSW01_13625	0.84	-0.2
2,899,185	-				-0.1
2,899,226	-				+0.2
2,899,231	+				+0.1
2,899,322	+				-0.0
2,899,330	-				+0.5
2,899,330	-				+0.2
2,899,409	+				-0.6
2,899,409	-				+0.1
2,899,427	-				+0.2
2,899,441	+				+0.7
2,899,441	+				+1.1
2,899,441	+				-0.0
2,899,441	+				-0.3
2,899,441	+				-0.1
2,899,441	+				+2.2
2,899,447	-				-0.1
2,899,448	+				+0.2
2,899,448	+				+0.1
2,899,449	-				-0.3
2,899,449	-				+0.1
2,899,449	-				-0.4
2,899,449	-				-1.5
2,899,449	-				-0.1
2,899,449	-				-0.5
2,899,449	-				-0.4
2,899,453	+				+1.3
2,899,453	+				+0.9
2,899,453	+				+0.3
2,899,456	-				-0.1
2,899,456	-				+0.1
2,899,456	-				-0.0
2,899,456	-				+0.0
2,899,458	+				-1.4
2,899,458	+				-0.1
2,899,458	+				-0.4
2,899,458	+				-0.3
2,899,458	+				+0.0
2,899,458	+				-0.2
2,899,458	+				-1.1
2,899,466	-				-0.4
2,899,466	-				-0.4
2,899,466	-				+0.4
2,899,466	-				+0.4
2,899,524	-				-0.4
2,899,526	+				-0.2
2,899,526	+				-0.0
2,899,534	-				+0.1
2,899,534	-				-0.7
2,899,534	-				-0.1
2,899,534	-				+0.4
2,899,534	-				+0.1
2,899,534	-				-0.2
2,899,542	+				+0.2
2,899,587	+				+0.4
2,899,595	-				+0.0
2,899,697	+				+0.3
2,899,711	+				-0.1
2,899,721	+				+1.9
2,899,721	+				-0.6
2,899,721	+				+0.2
2,899,721	+				-0.7
2,899,724	-				-0.7
2,899,729	-				+0.0
2,899,729	-				+0.1
2,899,729	-				+0.2
2,899,729	-				-0.4
2,899,729	-				-0.3
2,899,734	-				+0.5
2,899,754	-				+0.1
2,899,754	-				+0.2
2,899,787	+				-0.2
2,899,787	+				-0.7
2,899,787	+				-0.3
2,899,787	+				-0.9
2,899,795	-				+0.0
2,899,795	-				+0.0
2,899,795	-				-0.3
2,899,828	+				+0.5
2,899,833	+				-0.4
2,899,841	-				+0.5
2,899,841	-				+0.7
2,899,841	-				-0.4
2,899,876	+				+0.2
2,899,883	+				-0.4
2,899,885	+				+0.5
2,899,911	+				-1.6
2,899,911	+				+0.2
2,899,911	+				+0.1
2,899,916	+				+0.6
2,899,943	-				-0.0
2,899,972	-				+0.2
2,899,982	+				+0.4
2,899,995	-				+0.0
2,900,000	+				-0.4
2,900,009	+				+0.2
2,900,009	+				-0.1
2,900,120	-		CSW01_13630	0.13	+0.2
2,900,122	+		CSW01_13630	0.13	+1.5
2,900,122	-		CSW01_13630	0.13	+0.0
2,900,139	+		CSW01_13630	0.13	-0.7
2,900,144	+		CSW01_13630	0.13	-0.2
2,900,144	+		CSW01_13630	0.13	+0.1
2,900,144	+		CSW01_13630	0.13	+0.1
2,900,147	-		CSW01_13630	0.14	-0.5
2,900,149	+		CSW01_13630	0.14	+0.2
2,900,152	-		CSW01_13630	0.14	+0.6
2,900,175	+		CSW01_13630	0.14	+0.2
2,900,223	+		CSW01_13630	0.16	+0.5
2,900,231	+		CSW01_13630	0.16	-0.6
2,900,233	-		CSW01_13630	0.16	+0.4