Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_08975 and CSW01_08980 are separated by 134 nucleotides CSW01_08980 and CSW01_08985 are separated by 48 nucleotides CSW01_08985 and CSW01_08990 are separated by 54 nucleotides
CSW01_08975: CSW01_08975 - phage tail tape measure protein, at 1,937,501 to 1,938,541
_08975
CSW01_08980: CSW01_08980 - hypothetical protein, at 1,938,676 to 1,939,035
_08980
CSW01_08985: CSW01_08985 - 6-phospho-beta-glucosidase, at 1,939,084 to 1,939,461
_08985
CSW01_08990: CSW01_08990 - glyoxalase, at 1,939,516 to 1,940,094
_08990
Position (kb) 1938
1939
1940 Strain fitness (log2 ratio) -1
0
1 at 1937.694 kb on + strand, within CSW01_08975 at 1937.725 kb on + strand, within CSW01_08975 at 1937.805 kb on + strand, within CSW01_08975 at 1937.877 kb on + strand, within CSW01_08975 at 1938.047 kb on - strand, within CSW01_08975 at 1938.050 kb on + strand, within CSW01_08975 at 1938.050 kb on + strand, within CSW01_08975 at 1938.052 kb on - strand, within CSW01_08975 at 1938.058 kb on - strand, within CSW01_08975 at 1938.058 kb on - strand, within CSW01_08975 at 1938.119 kb on + strand, within CSW01_08975 at 1938.127 kb on - strand, within CSW01_08975 at 1938.186 kb on - strand, within CSW01_08975 at 1938.196 kb on + strand, within CSW01_08975 at 1938.220 kb on + strand, within CSW01_08975 at 1938.228 kb on - strand, within CSW01_08975 at 1938.260 kb on + strand, within CSW01_08975 at 1938.269 kb on - strand, within CSW01_08975 at 1938.326 kb on + strand, within CSW01_08975 at 1938.353 kb on + strand, within CSW01_08975 at 1938.378 kb on + strand, within CSW01_08975 at 1938.468 kb on + strand at 1938.716 kb on + strand, within CSW01_08980 at 1938.861 kb on - strand, within CSW01_08980 at 1938.945 kb on + strand, within CSW01_08980 at 1938.958 kb on - strand, within CSW01_08980 at 1938.980 kb on - strand, within CSW01_08980 at 1939.015 kb on + strand at 1939.070 kb on + strand at 1939.070 kb on + strand at 1939.078 kb on - strand at 1939.078 kb on - strand at 1939.164 kb on - strand, within CSW01_08985 at 1939.274 kb on - strand, within CSW01_08985 at 1939.383 kb on + strand, within CSW01_08985 at 1939.472 kb on + strand at 1939.472 kb on + strand at 1939.538 kb on - strand at 1939.595 kb on + strand, within CSW01_08990 at 1939.722 kb on - strand, within CSW01_08990 at 1939.788 kb on + strand, within CSW01_08990 at 1939.796 kb on - strand, within CSW01_08990 at 1939.900 kb on + strand, within CSW01_08990 at 1939.908 kb on - strand, within CSW01_08990 at 1939.908 kb on - strand, within CSW01_08990 at 1939.952 kb on - strand, within CSW01_08990
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 1,937,694 + CSW01_08975 0.19 +0.0 1,937,725 + CSW01_08975 0.22 -0.4 1,937,805 + CSW01_08975 0.29 +0.3 1,937,877 + CSW01_08975 0.36 -0.2 1,938,047 - CSW01_08975 0.52 +0.2 1,938,050 + CSW01_08975 0.53 +0.6 1,938,050 + CSW01_08975 0.53 -0.1 1,938,052 - CSW01_08975 0.53 -0.2 1,938,058 - CSW01_08975 0.54 +0.0 1,938,058 - CSW01_08975 0.54 +0.3 1,938,119 + CSW01_08975 0.59 -0.8 1,938,127 - CSW01_08975 0.60 +1.6 1,938,186 - CSW01_08975 0.66 +0.6 1,938,196 + CSW01_08975 0.67 +0.3 1,938,220 + CSW01_08975 0.69 -0.9 1,938,228 - CSW01_08975 0.70 +0.4 1,938,260 + CSW01_08975 0.73 +0.0 1,938,269 - CSW01_08975 0.74 +0.5 1,938,326 + CSW01_08975 0.79 -0.4 1,938,353 + CSW01_08975 0.82 +0.2 1,938,378 + CSW01_08975 0.84 -0.3 1,938,468 + +0.6 1,938,716 + CSW01_08980 0.11 -0.8 1,938,861 - CSW01_08980 0.51 -0.8 1,938,945 + CSW01_08980 0.75 -0.9 1,938,958 - CSW01_08980 0.78 +0.3 1,938,980 - CSW01_08980 0.84 +0.6 1,939,015 + +0.3 1,939,070 + +0.3 1,939,070 + +0.8 1,939,078 - +0.4 1,939,078 - +0.1 1,939,164 - CSW01_08985 0.21 +1.1 1,939,274 - CSW01_08985 0.50 -1.5 1,939,383 + CSW01_08985 0.79 +1.6 1,939,472 + -0.1 1,939,472 + -0.0 1,939,538 - +0.6 1,939,595 + CSW01_08990 0.14 -0.4 1,939,722 - CSW01_08990 0.36 -0.5 1,939,788 + CSW01_08990 0.47 -0.4 1,939,796 - CSW01_08990 0.48 -0.1 1,939,900 + CSW01_08990 0.66 -0.3 1,939,908 - CSW01_08990 0.68 -0.3 1,939,908 - CSW01_08990 0.68 +0.3 1,939,952 - CSW01_08990 0.75 -0.7
Or see this region's nucleotide sequence