Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_08210

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_08205 and CSW01_08210 are separated by 66 nucleotidesCSW01_08210 and CSW01_08215 overlap by 79 nucleotides CSW01_08205: CSW01_08205 - DUF2867 domain-containing protein, at 1,756,054 to 1,757,490 _08205 CSW01_08210: CSW01_08210 - DUF2913 domain-containing protein, at 1,757,557 to 1,758,294 _08210 CSW01_08215: CSW01_08215 - Bcr/CflA family drug resistance efflux transporter, at 1,758,216 to 1,759,421 _08215 Position (kb) 1757 1758 1759Strain fitness (log2 ratio) -2 -1 0 1at 1756.619 kb on - strand, within CSW01_08205at 1756.678 kb on - strand, within CSW01_08205at 1756.721 kb on - strand, within CSW01_08205at 1756.721 kb on - strand, within CSW01_08205at 1756.787 kb on - strand, within CSW01_08205at 1756.806 kb on + strand, within CSW01_08205at 1756.850 kb on + strand, within CSW01_08205at 1756.850 kb on + strand, within CSW01_08205at 1756.850 kb on + strand, within CSW01_08205at 1756.850 kb on + strand, within CSW01_08205at 1756.858 kb on - strand, within CSW01_08205at 1756.959 kb on - strand, within CSW01_08205at 1757.072 kb on + strand, within CSW01_08205at 1757.072 kb on + strand, within CSW01_08205at 1757.099 kb on + strand, within CSW01_08205at 1757.158 kb on - strand, within CSW01_08205at 1757.172 kb on + strand, within CSW01_08205at 1757.204 kb on - strand, within CSW01_08205at 1757.210 kb on + strand, within CSW01_08205at 1757.251 kb on + strand, within CSW01_08205at 1757.316 kb on - strand, within CSW01_08205at 1757.316 kb on - strand, within CSW01_08205at 1757.316 kb on - strand, within CSW01_08205at 1757.390 kb on - strandat 1757.680 kb on - strand, within CSW01_08210at 1757.781 kb on + strand, within CSW01_08210at 1757.781 kb on + strand, within CSW01_08210at 1757.781 kb on + strand, within CSW01_08210at 1757.781 kb on + strand, within CSW01_08210at 1757.784 kb on - strand, within CSW01_08210at 1757.789 kb on - strand, within CSW01_08210at 1757.932 kb on + strand, within CSW01_08210at 1758.033 kb on + strand, within CSW01_08210at 1758.033 kb on + strand, within CSW01_08210at 1758.074 kb on - strand, within CSW01_08210at 1758.171 kb on + strand, within CSW01_08210at 1758.171 kb on + strand, within CSW01_08210at 1758.184 kb on - strand, within CSW01_08210at 1758.257 kb on + strandat 1758.505 kb on + strand, within CSW01_08215at 1758.560 kb on - strand, within CSW01_08215at 1758.560 kb on - strand, within CSW01_08215at 1758.661 kb on - strand, within CSW01_08215at 1758.776 kb on + strand, within CSW01_08215at 1758.784 kb on - strand, within CSW01_08215at 1758.933 kb on + strand, within CSW01_08215at 1758.974 kb on + strand, within CSW01_08215at 1759.017 kb on + strand, within CSW01_08215at 1759.101 kb on + strand, within CSW01_08215at 1759.128 kb on + strand, within CSW01_08215at 1759.172 kb on - strand, within CSW01_08215at 1759.174 kb on - strand, within CSW01_08215

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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1,756,619 - CSW01_08205 0.39 -0.5
1,756,678 - CSW01_08205 0.43 -0.4
1,756,721 - CSW01_08205 0.46 -0.4
1,756,721 - CSW01_08205 0.46 -0.2
1,756,787 - CSW01_08205 0.51 +0.0
1,756,806 + CSW01_08205 0.52 +0.2
1,756,850 + CSW01_08205 0.55 +0.6
1,756,850 + CSW01_08205 0.55 +1.2
1,756,850 + CSW01_08205 0.55 +0.6
1,756,850 + CSW01_08205 0.55 +0.2
1,756,858 - CSW01_08205 0.56 -0.2
1,756,959 - CSW01_08205 0.63 -0.6
1,757,072 + CSW01_08205 0.71 +0.1
1,757,072 + CSW01_08205 0.71 +0.9
1,757,099 + CSW01_08205 0.73 -0.2
1,757,158 - CSW01_08205 0.77 -0.5
1,757,172 + CSW01_08205 0.78 -0.6
1,757,204 - CSW01_08205 0.80 +0.5
1,757,210 + CSW01_08205 0.80 -0.3
1,757,251 + CSW01_08205 0.83 -0.2
1,757,316 - CSW01_08205 0.88 +0.2
1,757,316 - CSW01_08205 0.88 +0.5
1,757,316 - CSW01_08205 0.88 -1.5
1,757,390 - +0.4
1,757,680 - CSW01_08210 0.17 -0.3
1,757,781 + CSW01_08210 0.30 +0.1
1,757,781 + CSW01_08210 0.30 -0.1
1,757,781 + CSW01_08210 0.30 +0.3
1,757,781 + CSW01_08210 0.30 +0.4
1,757,784 - CSW01_08210 0.31 -1.1
1,757,789 - CSW01_08210 0.31 +1.1
1,757,932 + CSW01_08210 0.51 +0.2
1,758,033 + CSW01_08210 0.64 +0.2
1,758,033 + CSW01_08210 0.64 -1.9
1,758,074 - CSW01_08210 0.70 -1.2
1,758,171 + CSW01_08210 0.83 -0.1
1,758,171 + CSW01_08210 0.83 -0.2
1,758,184 - CSW01_08210 0.85 -0.4
1,758,257 + -0.7
1,758,505 + CSW01_08215 0.24 +0.2
1,758,560 - CSW01_08215 0.29 -2.2
1,758,560 - CSW01_08215 0.29 -0.2
1,758,661 - CSW01_08215 0.37 -0.0
1,758,776 + CSW01_08215 0.46 +0.0
1,758,784 - CSW01_08215 0.47 +0.1
1,758,933 + CSW01_08215 0.59 -0.2
1,758,974 + CSW01_08215 0.63 +0.2
1,759,017 + CSW01_08215 0.66 +1.2
1,759,101 + CSW01_08215 0.73 +0.7
1,759,128 + CSW01_08215 0.76 -0.3
1,759,172 - CSW01_08215 0.79 +0.2
1,759,174 - CSW01_08215 0.79 +0.1

Or see this region's nucleotide sequence