Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_07065

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_07055 and CSW01_07060 are separated by 58 nucleotidesCSW01_07060 and CSW01_07065 are separated by 106 nucleotidesCSW01_07065 and CSW01_07070 overlap by 20 nucleotides CSW01_07055: CSW01_07055 - ATP-dependent helicase, at 1,498,417 to 1,499,610 _07055 CSW01_07060: CSW01_07060 - TetR/AcrR family transcriptional regulator, at 1,499,669 to 1,500,271 _07060 CSW01_07065: CSW01_07065 - multidrug resistance protein, at 1,500,378 to 1,501,832 _07065 CSW01_07070: CSW01_07070 - HlyD family secretion protein, at 1,501,813 to 1,503,033 _07070 Position (kb) 1500 1501 1502Strain fitness (log2 ratio) -1 0 1at 1499.419 kb on - strand, within CSW01_07055at 1499.527 kb on + strandat 1499.535 kb on - strandat 1499.535 kb on - strandat 1499.607 kb on - strandat 1499.687 kb on - strandat 1499.823 kb on + strand, within CSW01_07060at 1500.071 kb on + strand, within CSW01_07060at 1500.147 kb on + strand, within CSW01_07060at 1500.193 kb on + strand, within CSW01_07060at 1500.410 kb on - strandat 1500.482 kb on + strandat 1500.490 kb on - strandat 1500.630 kb on + strand, within CSW01_07065at 1500.676 kb on - strand, within CSW01_07065at 1500.676 kb on - strand, within CSW01_07065at 1500.810 kb on + strand, within CSW01_07065at 1500.902 kb on + strand, within CSW01_07065at 1500.910 kb on + strand, within CSW01_07065at 1501.013 kb on - strand, within CSW01_07065at 1501.516 kb on + strand, within CSW01_07065at 1501.524 kb on - strand, within CSW01_07065at 1501.530 kb on + strand, within CSW01_07065at 1501.637 kb on - strand, within CSW01_07065at 1501.952 kb on + strand, within CSW01_07070at 1501.952 kb on + strand, within CSW01_07070at 1501.960 kb on - strand, within CSW01_07070at 1501.979 kb on - strand, within CSW01_07070at 1502.012 kb on - strand, within CSW01_07070at 1502.012 kb on - strand, within CSW01_07070at 1502.036 kb on + strand, within CSW01_07070at 1502.064 kb on + strand, within CSW01_07070at 1502.135 kb on + strand, within CSW01_07070at 1502.212 kb on + strand, within CSW01_07070at 1502.220 kb on - strand, within CSW01_07070at 1502.220 kb on - strand, within CSW01_07070at 1502.220 kb on - strand, within CSW01_07070at 1502.221 kb on - strand, within CSW01_07070at 1502.268 kb on + strand, within CSW01_07070at 1502.268 kb on + strand, within CSW01_07070at 1502.276 kb on - strand, within CSW01_07070at 1502.334 kb on - strand, within CSW01_07070at 1502.594 kb on + strand, within CSW01_07070at 1502.640 kb on + strand, within CSW01_07070at 1502.757 kb on + strand, within CSW01_07070

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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1,499,419 - CSW01_07055 0.84 -0.5
1,499,527 + -0.0
1,499,535 - +0.7
1,499,535 - -0.8
1,499,607 - -0.1
1,499,687 - +0.2
1,499,823 + CSW01_07060 0.26 -1.4
1,500,071 + CSW01_07060 0.67 -0.4
1,500,147 + CSW01_07060 0.79 +0.2
1,500,193 + CSW01_07060 0.87 -1.2
1,500,410 - -0.1
1,500,482 + -0.1
1,500,490 - +0.3
1,500,630 + CSW01_07065 0.17 +0.8
1,500,676 - CSW01_07065 0.20 -0.8
1,500,676 - CSW01_07065 0.20 +0.6
1,500,810 + CSW01_07065 0.30 +0.1
1,500,902 + CSW01_07065 0.36 +0.6
1,500,910 + CSW01_07065 0.37 +0.5
1,501,013 - CSW01_07065 0.44 +0.3
1,501,516 + CSW01_07065 0.78 -1.3
1,501,524 - CSW01_07065 0.79 +0.1
1,501,530 + CSW01_07065 0.79 +0.1
1,501,637 - CSW01_07065 0.87 -0.5
1,501,952 + CSW01_07070 0.11 -0.2
1,501,952 + CSW01_07070 0.11 +0.3
1,501,960 - CSW01_07070 0.12 +0.5
1,501,979 - CSW01_07070 0.14 +0.3
1,502,012 - CSW01_07070 0.16 +0.2
1,502,012 - CSW01_07070 0.16 -0.6
1,502,036 + CSW01_07070 0.18 -0.1
1,502,064 + CSW01_07070 0.21 -1.2
1,502,135 + CSW01_07070 0.26 -0.1
1,502,212 + CSW01_07070 0.33 +0.2
1,502,220 - CSW01_07070 0.33 -0.6
1,502,220 - CSW01_07070 0.33 +0.6
1,502,220 - CSW01_07070 0.33 -1.0
1,502,221 - CSW01_07070 0.33 -0.2
1,502,268 + CSW01_07070 0.37 -0.2
1,502,268 + CSW01_07070 0.37 +0.1
1,502,276 - CSW01_07070 0.38 +0.1
1,502,334 - CSW01_07070 0.43 -1.0
1,502,594 + CSW01_07070 0.64 +0.4
1,502,640 + CSW01_07070 0.68 +0.9
1,502,757 + CSW01_07070 0.77 +0.0

Or see this region's nucleotide sequence