Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04525

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04520 and CSW01_04525 are separated by 65 nucleotidesCSW01_04525 and CSW01_04530 overlap by 4 nucleotides CSW01_04520: CSW01_04520 - aminobenzoyl-glutamate transporter, at 939,944 to 941,530 _04520 CSW01_04525: CSW01_04525 - DUF188 domain-containing protein, at 941,596 to 942,045 _04525 CSW01_04530: CSW01_04530 - hypothetical protein, at 942,042 to 942,341 _04530 Position (kb) 941 942 943Strain fitness (log2 ratio) -2 -1 0 1 2at 940.608 kb on + strand, within CSW01_04520at 940.645 kb on - strand, within CSW01_04520at 940.692 kb on + strand, within CSW01_04520at 940.725 kb on - strand, within CSW01_04520at 940.739 kb on + strand, within CSW01_04520at 940.739 kb on + strand, within CSW01_04520at 940.739 kb on + strand, within CSW01_04520at 940.781 kb on + strand, within CSW01_04520at 940.786 kb on + strand, within CSW01_04520at 940.794 kb on - strand, within CSW01_04520at 940.869 kb on - strand, within CSW01_04520at 940.870 kb on + strand, within CSW01_04520at 940.922 kb on - strand, within CSW01_04520at 940.944 kb on + strand, within CSW01_04520at 940.949 kb on + strand, within CSW01_04520at 940.949 kb on + strand, within CSW01_04520at 940.949 kb on + strand, within CSW01_04520at 940.949 kb on + strand, within CSW01_04520at 940.949 kb on + strand, within CSW01_04520at 940.949 kb on + strand, within CSW01_04520at 940.949 kb on + strand, within CSW01_04520at 940.949 kb on + strand, within CSW01_04520at 940.957 kb on - strand, within CSW01_04520at 940.957 kb on - strand, within CSW01_04520at 940.957 kb on - strand, within CSW01_04520at 940.957 kb on - strand, within CSW01_04520at 941.031 kb on + strand, within CSW01_04520at 941.035 kb on - strand, within CSW01_04520at 941.151 kb on - strand, within CSW01_04520at 941.151 kb on - strand, within CSW01_04520at 941.151 kb on - strand, within CSW01_04520at 941.153 kb on + strand, within CSW01_04520at 941.274 kb on + strand, within CSW01_04520at 941.274 kb on + strand, within CSW01_04520at 941.329 kb on - strand, within CSW01_04520at 941.354 kb on - strand, within CSW01_04520at 941.354 kb on - strand, within CSW01_04520at 941.354 kb on - strand, within CSW01_04520at 941.368 kb on + strand, within CSW01_04520at 941.447 kb on + strandat 941.469 kb on - strandat 941.601 kb on - strandat 941.748 kb on + strand, within CSW01_04525at 941.753 kb on + strand, within CSW01_04525at 941.836 kb on - strand, within CSW01_04525at 941.896 kb on + strand, within CSW01_04525at 941.896 kb on + strand, within CSW01_04525at 941.896 kb on + strand, within CSW01_04525at 941.969 kb on + strand, within CSW01_04525at 941.970 kb on - strand, within CSW01_04525at 942.032 kb on + strandat 942.032 kb on + strandat 942.063 kb on - strandat 942.088 kb on + strand, within CSW01_04530at 942.131 kb on + strand, within CSW01_04530at 942.131 kb on + strand, within CSW01_04530at 942.131 kb on + strand, within CSW01_04530at 942.139 kb on - strand, within CSW01_04530at 942.139 kb on - strand, within CSW01_04530at 942.139 kb on - strand, within CSW01_04530at 942.139 kb on - strand, within CSW01_04530at 942.139 kb on - strand, within CSW01_04530at 942.139 kb on - strand, within CSW01_04530at 942.139 kb on - strand, within CSW01_04530at 942.139 kb on - strand, within CSW01_04530at 942.139 kb on - strand, within CSW01_04530at 942.180 kb on + strand, within CSW01_04530at 942.225 kb on + strand, within CSW01_04530at 942.225 kb on + strand, within CSW01_04530at 942.250 kb on + strand, within CSW01_04530at 942.250 kb on + strand, within CSW01_04530at 942.328 kb on + strandat 942.336 kb on - strandat 942.371 kb on - strandat 942.407 kb on + strandat 942.428 kb on - strandat 942.525 kb on + strandat 942.663 kb on + strandat 942.719 kb on + strandat 942.719 kb on + strandat 942.727 kb on - strandat 942.752 kb on - strandat 942.792 kb on + strandat 942.795 kb on - strandat 942.807 kb on + strandat 942.813 kb on + strandat 942.857 kb on + strandat 942.888 kb on - strandat 942.990 kb on - strandat 943.006 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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940,608 + CSW01_04520 0.42 +0.2
940,645 - CSW01_04520 0.44 -0.1
940,692 + CSW01_04520 0.47 -0.1
940,725 - CSW01_04520 0.49 +0.4
940,739 + CSW01_04520 0.50 +0.2
940,739 + CSW01_04520 0.50 -0.4
940,739 + CSW01_04520 0.50 -0.1
940,781 + CSW01_04520 0.53 +0.1
940,786 + CSW01_04520 0.53 +0.2
940,794 - CSW01_04520 0.54 +0.2
940,869 - CSW01_04520 0.58 +1.4
940,870 + CSW01_04520 0.58 +0.2
940,922 - CSW01_04520 0.62 +0.6
940,944 + CSW01_04520 0.63 +0.3
940,949 + CSW01_04520 0.63 +0.8
940,949 + CSW01_04520 0.63 -0.1
940,949 + CSW01_04520 0.63 -0.6
940,949 + CSW01_04520 0.63 +0.3
940,949 + CSW01_04520 0.63 +0.2
940,949 + CSW01_04520 0.63 +0.7
940,949 + CSW01_04520 0.63 +0.2
940,949 + CSW01_04520 0.63 +0.2
940,957 - CSW01_04520 0.64 -0.1
940,957 - CSW01_04520 0.64 +0.2
940,957 - CSW01_04520 0.64 -0.9
940,957 - CSW01_04520 0.64 +0.6
941,031 + CSW01_04520 0.68 -0.6
941,035 - CSW01_04520 0.69 +0.1
941,151 - CSW01_04520 0.76 -1.4
941,151 - CSW01_04520 0.76 -0.8
941,151 - CSW01_04520 0.76 +0.7
941,153 + CSW01_04520 0.76 -0.1
941,274 + CSW01_04520 0.84 +0.3
941,274 + CSW01_04520 0.84 +0.5
941,329 - CSW01_04520 0.87 -0.3
941,354 - CSW01_04520 0.89 -1.1
941,354 - CSW01_04520 0.89 -0.5
941,354 - CSW01_04520 0.89 +0.5
941,368 + CSW01_04520 0.90 +0.3
941,447 + -0.5
941,469 - -0.2
941,601 - +0.1
941,748 + CSW01_04525 0.34 -0.0
941,753 + CSW01_04525 0.35 -0.7
941,836 - CSW01_04525 0.53 +0.2
941,896 + CSW01_04525 0.67 -0.5
941,896 + CSW01_04525 0.67 -0.9
941,896 + CSW01_04525 0.67 -1.2
941,969 + CSW01_04525 0.83 -0.6
941,970 - CSW01_04525 0.83 +0.3
942,032 + -0.4
942,032 + +0.5
942,063 - -0.2
942,088 + CSW01_04530 0.15 +0.1
942,131 + CSW01_04530 0.30 -0.1
942,131 + CSW01_04530 0.30 -1.1
942,131 + CSW01_04530 0.30 +0.2
942,139 - CSW01_04530 0.32 +0.5
942,139 - CSW01_04530 0.32 +0.1
942,139 - CSW01_04530 0.32 +0.2
942,139 - CSW01_04530 0.32 -0.6
942,139 - CSW01_04530 0.32 +0.7
942,139 - CSW01_04530 0.32 +0.4
942,139 - CSW01_04530 0.32 +0.1
942,139 - CSW01_04530 0.32 -0.4
942,139 - CSW01_04530 0.32 -0.2
942,180 + CSW01_04530 0.46 +0.5
942,225 + CSW01_04530 0.61 +0.6
942,225 + CSW01_04530 0.61 +0.0
942,250 + CSW01_04530 0.69 +0.1
942,250 + CSW01_04530 0.69 -0.9
942,328 + -0.1
942,336 - +0.1
942,371 - +2.0
942,407 + -1.2
942,428 - +1.0
942,525 + +1.0
942,663 + +0.8
942,719 + +0.2
942,719 + -2.7
942,727 - -0.2
942,752 - -0.3
942,792 + -0.7
942,795 - -0.9
942,807 + -1.5
942,813 + +0.2
942,857 + +0.2
942,888 - -0.3
942,990 - +0.3
943,006 + -0.1

Or see this region's nucleotide sequence