Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03875

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03870 and CSW01_03875 are separated by 178 nucleotidesCSW01_03875 and CSW01_03880 are separated by 69 nucleotidesCSW01_03880 and CSW01_03885 are separated by 26 nucleotides CSW01_03870: CSW01_03870 - inositol monophosphatase, at 797,568 to 798,371 _03870 CSW01_03875: CSW01_03875 - tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ, at 798,550 to 799,284 _03875 CSW01_03880: CSW01_03880 - HTH-type transcriptional regulator IscR, at 799,354 to 799,920 _03880 CSW01_03885: CSW01_03885 - IscS subfamily cysteine desulfurase, at 799,947 to 801,161 _03885 Position (kb) 798 799 800Strain fitness (log2 ratio) -2 -1 0 1at 797.756 kb on + strand, within CSW01_03870at 797.972 kb on - strand, within CSW01_03870at 797.980 kb on + strand, within CSW01_03870at 798.106 kb on + strand, within CSW01_03870at 798.201 kb on - strand, within CSW01_03870at 798.421 kb on - strandat 798.477 kb on + strandat 798.477 kb on + strandat 798.487 kb on - strandat 798.492 kb on - strandat 798.511 kb on - strandat 798.524 kb on + strandat 798.524 kb on + strandat 798.542 kb on - strandat 798.584 kb on + strandat 798.592 kb on - strandat 798.651 kb on + strand, within CSW01_03875at 798.669 kb on + strand, within CSW01_03875at 798.773 kb on + strand, within CSW01_03875at 798.778 kb on + strand, within CSW01_03875at 798.806 kb on + strand, within CSW01_03875at 798.806 kb on + strand, within CSW01_03875at 798.806 kb on + strand, within CSW01_03875at 798.806 kb on + strand, within CSW01_03875at 798.806 kb on + strand, within CSW01_03875at 798.814 kb on - strand, within CSW01_03875at 798.814 kb on - strand, within CSW01_03875at 798.814 kb on - strand, within CSW01_03875at 798.815 kb on + strand, within CSW01_03875at 798.821 kb on + strand, within CSW01_03875at 798.880 kb on + strand, within CSW01_03875at 798.888 kb on - strand, within CSW01_03875at 798.901 kb on - strand, within CSW01_03875at 798.907 kb on + strand, within CSW01_03875at 798.917 kb on + strand, within CSW01_03875at 798.952 kb on - strand, within CSW01_03875at 798.975 kb on - strand, within CSW01_03875at 798.989 kb on - strand, within CSW01_03875at 799.010 kb on + strand, within CSW01_03875at 799.010 kb on + strand, within CSW01_03875at 799.018 kb on - strand, within CSW01_03875at 799.026 kb on + strand, within CSW01_03875at 799.056 kb on + strand, within CSW01_03875at 799.064 kb on - strand, within CSW01_03875at 799.068 kb on + strand, within CSW01_03875at 799.126 kb on + strand, within CSW01_03875at 799.370 kb on + strandat 799.713 kb on + strand, within CSW01_03880at 799.844 kb on + strand, within CSW01_03880at 799.927 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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797,756 + CSW01_03870 0.23 -1.4
797,972 - CSW01_03870 0.50 -2.0
797,980 + CSW01_03870 0.51 -0.3
798,106 + CSW01_03870 0.67 -2.0
798,201 - CSW01_03870 0.79 +0.2
798,421 - -0.4
798,477 + -0.2
798,477 + -0.1
798,487 - -0.5
798,492 - -0.9
798,511 - +0.2
798,524 + -0.1
798,524 + +0.3
798,542 - +1.2
798,584 + -0.7
798,592 - -1.6
798,651 + CSW01_03875 0.14 -0.4
798,669 + CSW01_03875 0.16 -0.5
798,773 + CSW01_03875 0.30 +0.3
798,778 + CSW01_03875 0.31 -0.2
798,806 + CSW01_03875 0.35 -0.8
798,806 + CSW01_03875 0.35 -0.7
798,806 + CSW01_03875 0.35 +1.1
798,806 + CSW01_03875 0.35 +0.3
798,806 + CSW01_03875 0.35 +0.1
798,814 - CSW01_03875 0.36 +0.4
798,814 - CSW01_03875 0.36 -1.4
798,814 - CSW01_03875 0.36 +0.8
798,815 + CSW01_03875 0.36 +0.2
798,821 + CSW01_03875 0.37 +0.3
798,880 + CSW01_03875 0.45 -0.2
798,888 - CSW01_03875 0.46 -1.0
798,901 - CSW01_03875 0.48 +0.0
798,907 + CSW01_03875 0.49 -0.0
798,917 + CSW01_03875 0.50 +0.9
798,952 - CSW01_03875 0.55 +0.3
798,975 - CSW01_03875 0.58 -0.1
798,989 - CSW01_03875 0.60 +0.5
799,010 + CSW01_03875 0.63 +0.3
799,010 + CSW01_03875 0.63 -0.3
799,018 - CSW01_03875 0.64 +0.2
799,026 + CSW01_03875 0.65 +0.0
799,056 + CSW01_03875 0.69 -0.2
799,064 - CSW01_03875 0.70 +0.0
799,068 + CSW01_03875 0.70 +0.6
799,126 + CSW01_03875 0.78 +0.2
799,370 + +0.1
799,713 + CSW01_03880 0.63 -0.3
799,844 + CSW01_03880 0.86 -0.3
799,927 + +0.9

Or see this region's nucleotide sequence