Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03590

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03580 and CSW01_03585 are separated by 162 nucleotidesCSW01_03585 and CSW01_03590 are separated by 46 nucleotidesCSW01_03590 and CSW01_03595 are separated by 136 nucleotides CSW01_03580: CSW01_03580 - lipoprotein signal peptidase, at 730,296 to 730,811 _03580 CSW01_03585: CSW01_03585 - peptidylprolyl isomerase, at 730,974 to 731,408 _03585 CSW01_03590: CSW01_03590 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 731,455 to 732,405 _03590 CSW01_03595: CSW01_03595 - carbon starvation protein A, at 732,542 to 734,026 _03595 Position (kb) 731 732 733Strain fitness (log2 ratio) -1 0 1at 730.821 kb on - strandat 730.826 kb on - strandat 730.826 kb on - strandat 730.994 kb on - strandat 730.996 kb on - strandat 731.048 kb on - strand, within CSW01_03585at 731.048 kb on - strand, within CSW01_03585at 731.194 kb on + strand, within CSW01_03585at 731.202 kb on - strand, within CSW01_03585at 731.354 kb on + strand, within CSW01_03585at 731.362 kb on - strand, within CSW01_03585at 731.364 kb on + strand, within CSW01_03585at 731.364 kb on + strand, within CSW01_03585at 731.377 kb on + strandat 731.393 kb on - strandat 731.453 kb on - strandat 732.568 kb on - strandat 732.596 kb on + strandat 732.604 kb on - strandat 732.626 kb on + strandat 732.626 kb on + strandat 732.633 kb on + strandat 732.639 kb on + strandat 732.701 kb on + strand, within CSW01_03595at 732.704 kb on + strand, within CSW01_03595at 732.717 kb on - strand, within CSW01_03595at 732.727 kb on - strand, within CSW01_03595at 732.727 kb on - strand, within CSW01_03595at 732.732 kb on + strand, within CSW01_03595at 732.732 kb on + strand, within CSW01_03595at 732.732 kb on + strand, within CSW01_03595at 732.732 kb on + strand, within CSW01_03595at 732.732 kb on + strand, within CSW01_03595at 732.740 kb on - strand, within CSW01_03595at 732.740 kb on - strand, within CSW01_03595at 732.740 kb on - strand, within CSW01_03595at 732.740 kb on - strand, within CSW01_03595at 732.740 kb on - strand, within CSW01_03595at 732.753 kb on + strand, within CSW01_03595at 732.756 kb on - strand, within CSW01_03595at 732.875 kb on + strand, within CSW01_03595at 732.875 kb on + strand, within CSW01_03595at 732.875 kb on + strand, within CSW01_03595at 732.875 kb on + strand, within CSW01_03595at 732.880 kb on + strand, within CSW01_03595at 732.880 kb on + strand, within CSW01_03595at 732.883 kb on + strand, within CSW01_03595at 732.888 kb on - strand, within CSW01_03595at 732.888 kb on - strand, within CSW01_03595at 732.909 kb on + strand, within CSW01_03595at 732.931 kb on + strand, within CSW01_03595at 732.953 kb on - strand, within CSW01_03595at 733.118 kb on - strand, within CSW01_03595at 733.147 kb on + strand, within CSW01_03595at 733.163 kb on - strand, within CSW01_03595at 733.166 kb on - strand, within CSW01_03595at 733.176 kb on - strand, within CSW01_03595at 733.296 kb on + strand, within CSW01_03595at 733.304 kb on - strand, within CSW01_03595at 733.368 kb on - strand, within CSW01_03595at 733.375 kb on + strand, within CSW01_03595at 733.392 kb on - strand, within CSW01_03595

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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730,821 - +0.2
730,826 - -0.4
730,826 - +0.4
730,994 - -1.2
730,996 - +0.4
731,048 - CSW01_03585 0.17 -0.6
731,048 - CSW01_03585 0.17 +1.1
731,194 + CSW01_03585 0.51 -0.0
731,202 - CSW01_03585 0.52 -0.5
731,354 + CSW01_03585 0.87 +0.5
731,362 - CSW01_03585 0.89 -0.7
731,364 + CSW01_03585 0.90 -1.2
731,364 + CSW01_03585 0.90 -0.7
731,377 + -0.2
731,393 - +1.0
731,453 - +0.8
732,568 - -0.8
732,596 + -0.9
732,604 - -0.6
732,626 + +0.1
732,626 + -0.2
732,633 + +1.0
732,639 + +0.2
732,701 + CSW01_03595 0.11 +0.2
732,704 + CSW01_03595 0.11 -0.9
732,717 - CSW01_03595 0.12 -0.0
732,727 - CSW01_03595 0.12 -1.0
732,727 - CSW01_03595 0.12 +0.3
732,732 + CSW01_03595 0.13 +0.8
732,732 + CSW01_03595 0.13 +1.3
732,732 + CSW01_03595 0.13 +0.0
732,732 + CSW01_03595 0.13 -0.3
732,732 + CSW01_03595 0.13 -0.4
732,740 - CSW01_03595 0.13 +0.0
732,740 - CSW01_03595 0.13 -0.6
732,740 - CSW01_03595 0.13 -0.6
732,740 - CSW01_03595 0.13 -0.4
732,740 - CSW01_03595 0.13 +0.6
732,753 + CSW01_03595 0.14 -0.4
732,756 - CSW01_03595 0.14 +0.1
732,875 + CSW01_03595 0.22 +0.3
732,875 + CSW01_03595 0.22 -0.9
732,875 + CSW01_03595 0.22 -0.2
732,875 + CSW01_03595 0.22 +0.2
732,880 + CSW01_03595 0.23 +0.8
732,880 + CSW01_03595 0.23 +0.0
732,883 + CSW01_03595 0.23 -0.4
732,888 - CSW01_03595 0.23 -0.2
732,888 - CSW01_03595 0.23 -0.1
732,909 + CSW01_03595 0.25 -0.4
732,931 + CSW01_03595 0.26 +0.1
732,953 - CSW01_03595 0.28 -0.4
733,118 - CSW01_03595 0.39 +0.4
733,147 + CSW01_03595 0.41 -0.3
733,163 - CSW01_03595 0.42 -0.8
733,166 - CSW01_03595 0.42 +1.2
733,176 - CSW01_03595 0.43 -0.6
733,296 + CSW01_03595 0.51 +0.1
733,304 - CSW01_03595 0.51 +0.1
733,368 - CSW01_03595 0.56 +0.1
733,375 + CSW01_03595 0.56 +0.1
733,392 - CSW01_03595 0.57 -0.0

Or see this region's nucleotide sequence