Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_03185 and CSW01_03190 are separated by 154 nucleotides CSW01_03190 and CSW01_03195 are separated by 177 nucleotides CSW01_03195 and CSW01_03200 are separated by 21 nucleotides
CSW01_03185: CSW01_03185 - aconitate hydratase B, at 632,633 to 635,230
_03185
CSW01_03190: CSW01_03190 - hypothetical protein, at 635,385 to 635,765
_03190
CSW01_03195: CSW01_03195 - transcriptional regulator, at 635,943 to 636,281
_03195
CSW01_03200: CSW01_03200 - ammonium transporter, at 636,303 to 637,532
_03200
Position (kb) 635
636 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 634.407 kb on + strand, within CSW01_03185 at 635.180 kb on + strand at 635.297 kb on + strand at 635.310 kb on + strand at 635.310 kb on + strand at 635.344 kb on + strand at 635.376 kb on + strand at 635.384 kb on - strand at 635.384 kb on - strand at 635.438 kb on - strand, within CSW01_03190 at 635.485 kb on + strand, within CSW01_03190 at 635.492 kb on - strand, within CSW01_03190 at 635.512 kb on + strand, within CSW01_03190 at 635.525 kb on + strand, within CSW01_03190 at 635.539 kb on - strand, within CSW01_03190 at 635.555 kb on - strand, within CSW01_03190 at 635.564 kb on + strand, within CSW01_03190 at 635.610 kb on + strand, within CSW01_03190 at 635.610 kb on + strand, within CSW01_03190 at 635.610 kb on + strand, within CSW01_03190 at 635.618 kb on - strand, within CSW01_03190 at 635.618 kb on - strand, within CSW01_03190 at 635.618 kb on - strand, within CSW01_03190 at 635.627 kb on + strand, within CSW01_03190 at 635.675 kb on - strand, within CSW01_03190 at 635.675 kb on - strand, within CSW01_03190 at 635.683 kb on + strand, within CSW01_03190 at 635.759 kb on + strand at 635.764 kb on + strand at 635.764 kb on + strand at 635.767 kb on - strand at 635.767 kb on - strand at 635.767 kb on - strand at 635.772 kb on - strand at 635.774 kb on + strand at 635.782 kb on - strand at 636.054 kb on + strand, within CSW01_03195 at 636.054 kb on - strand, within CSW01_03195 at 636.055 kb on - strand, within CSW01_03195 at 636.080 kb on - strand, within CSW01_03195 at 636.085 kb on - strand, within CSW01_03195 at 636.085 kb on - strand, within CSW01_03195 at 636.085 kb on - strand, within CSW01_03195 at 636.085 kb on - strand, within CSW01_03195 at 636.085 kb on - strand, within CSW01_03195 at 636.085 kb on - strand, within CSW01_03195 at 636.188 kb on + strand, within CSW01_03195 at 636.226 kb on + strand, within CSW01_03195 at 636.248 kb on - strand at 636.372 kb on - strand at 636.425 kb on - strand at 636.425 kb on - strand at 636.470 kb on + strand, within CSW01_03200 at 636.512 kb on - strand, within CSW01_03200 at 636.515 kb on + strand, within CSW01_03200 at 636.538 kb on - strand, within CSW01_03200 at 636.549 kb on + strand, within CSW01_03200 at 636.586 kb on + strand, within CSW01_03200 at 636.594 kb on - strand, within CSW01_03200 at 636.655 kb on + strand, within CSW01_03200 at 636.711 kb on + strand, within CSW01_03200 at 636.711 kb on + strand, within CSW01_03200 at 636.711 kb on + strand, within CSW01_03200 at 636.719 kb on - strand, within CSW01_03200 at 636.720 kb on + strand, within CSW01_03200 at 636.725 kb on + strand, within CSW01_03200 at 636.733 kb on + strand, within CSW01_03200 at 636.756 kb on - strand, within CSW01_03200
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 634,407 + CSW01_03185 0.68 +0.3 635,180 + +0.9 635,297 + -3.3 635,310 + -0.1 635,310 + +0.1 635,344 + +0.1 635,376 + -0.1 635,384 - -0.9 635,384 - -0.3 635,438 - CSW01_03190 0.14 -0.1 635,485 + CSW01_03190 0.26 -0.3 635,492 - CSW01_03190 0.28 -0.2 635,512 + CSW01_03190 0.33 -0.6 635,525 + CSW01_03190 0.37 -0.0 635,539 - CSW01_03190 0.40 -0.1 635,555 - CSW01_03190 0.45 +0.7 635,564 + CSW01_03190 0.47 +0.5 635,610 + CSW01_03190 0.59 +0.2 635,610 + CSW01_03190 0.59 -0.7 635,610 + CSW01_03190 0.59 -0.0 635,618 - CSW01_03190 0.61 -0.2 635,618 - CSW01_03190 0.61 +0.6 635,618 - CSW01_03190 0.61 -0.4 635,627 + CSW01_03190 0.64 +0.6 635,675 - CSW01_03190 0.76 +0.6 635,675 - CSW01_03190 0.76 +0.6 635,683 + CSW01_03190 0.78 +0.5 635,759 + +0.3 635,764 + -0.8 635,764 + +0.1 635,767 - -0.6 635,767 - +0.0 635,767 - -0.9 635,772 - -0.1 635,774 + +0.2 635,782 - -0.4 636,054 + CSW01_03195 0.33 +2.1 636,054 - CSW01_03195 0.33 -0.5 636,055 - CSW01_03195 0.33 +0.3 636,080 - CSW01_03195 0.40 -0.1 636,085 - CSW01_03195 0.42 -0.3 636,085 - CSW01_03195 0.42 -0.4 636,085 - CSW01_03195 0.42 -0.7 636,085 - CSW01_03195 0.42 -1.5 636,085 - CSW01_03195 0.42 -0.2 636,085 - CSW01_03195 0.42 -0.2 636,188 + CSW01_03195 0.72 -0.1 636,226 + CSW01_03195 0.83 +0.1 636,248 - -0.2 636,372 - -0.3 636,425 - -0.3 636,425 - -0.2 636,470 + CSW01_03200 0.14 +0.3 636,512 - CSW01_03200 0.17 +0.5 636,515 + CSW01_03200 0.17 -1.3 636,538 - CSW01_03200 0.19 +1.6 636,549 + CSW01_03200 0.20 -0.1 636,586 + CSW01_03200 0.23 -0.5 636,594 - CSW01_03200 0.24 -1.2 636,655 + CSW01_03200 0.29 -0.1 636,711 + CSW01_03200 0.33 -0.5 636,711 + CSW01_03200 0.33 +0.3 636,711 + CSW01_03200 0.33 +0.5 636,719 - CSW01_03200 0.34 -0.7 636,720 + CSW01_03200 0.34 +0.3 636,725 + CSW01_03200 0.34 -0.2 636,733 + CSW01_03200 0.35 -0.4 636,756 - CSW01_03200 0.37 +0.2
Or see this region's nucleotide sequence