Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02795

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02780 and CSW01_02785 overlap by 38 nucleotidesCSW01_02785 and CSW01_02790 overlap by 4 nucleotidesCSW01_02790 and CSW01_02795 overlap by 4 nucleotidesCSW01_02795 and CSW01_02800 are separated by 108 nucleotidesCSW01_02800 and CSW01_02805 overlap by 4 nucleotides CSW01_02780: CSW01_02780 - hypothetical protein, at 556,572 to 556,754 _02780 CSW01_02785: CSW01_02785 - bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase, at 556,717 to 557,106 _02785 CSW01_02790: CSW01_02790 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 557,103 to 557,609 _02790 CSW01_02795: CSW01_02795 - undecaprenyl-diphosphatase, at 557,606 to 558,409 _02795 CSW01_02800: CSW01_02800 - cell division protein FtsB, at 558,518 to 558,808 _02800 CSW01_02805: CSW01_02805 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 558,805 to 559,503 _02805 Position (kb) 557 558 559Strain fitness (log2 ratio) -2 -1 0 1at 556.664 kb on + strand, within CSW01_02780at 556.664 kb on + strand, within CSW01_02780at 556.664 kb on + strand, within CSW01_02780at 556.664 kb on + strand, within CSW01_02780at 556.669 kb on + strand, within CSW01_02780at 556.672 kb on - strand, within CSW01_02780at 556.739 kb on + strandat 557.128 kb on + strandat 557.153 kb on + strandat 557.211 kb on + strand, within CSW01_02790at 557.219 kb on - strand, within CSW01_02790at 557.247 kb on + strand, within CSW01_02790at 557.291 kb on + strand, within CSW01_02790at 557.291 kb on + strand, within CSW01_02790at 557.414 kb on - strand, within CSW01_02790at 557.427 kb on - strand, within CSW01_02790at 557.432 kb on - strand, within CSW01_02790at 557.546 kb on + strand, within CSW01_02790at 557.563 kb on + strandat 557.563 kb on + strandat 557.563 kb on + strandat 557.563 kb on + strandat 557.571 kb on - strandat 557.571 kb on - strandat 557.571 kb on - strandat 557.571 kb on - strandat 557.571 kb on - strandat 557.571 kb on - strandat 557.639 kb on + strandat 557.645 kb on + strandat 557.710 kb on - strand, within CSW01_02795at 557.717 kb on + strand, within CSW01_02795at 557.717 kb on + strand, within CSW01_02795at 557.717 kb on + strand, within CSW01_02795at 557.725 kb on - strand, within CSW01_02795at 557.771 kb on + strand, within CSW01_02795at 557.878 kb on + strand, within CSW01_02795at 557.924 kb on + strand, within CSW01_02795at 557.943 kb on + strand, within CSW01_02795at 557.943 kb on + strand, within CSW01_02795at 557.951 kb on - strand, within CSW01_02795at 557.951 kb on - strand, within CSW01_02795at 557.951 kb on - strand, within CSW01_02795at 557.972 kb on - strand, within CSW01_02795at 557.987 kb on - strand, within CSW01_02795at 558.005 kb on - strand, within CSW01_02795at 558.013 kb on + strand, within CSW01_02795at 558.021 kb on - strand, within CSW01_02795at 558.021 kb on - strand, within CSW01_02795at 558.021 kb on - strand, within CSW01_02795at 558.120 kb on + strand, within CSW01_02795at 558.132 kb on + strand, within CSW01_02795at 558.140 kb on - strand, within CSW01_02795at 558.140 kb on - strand, within CSW01_02795at 558.145 kb on - strand, within CSW01_02795at 558.224 kb on + strand, within CSW01_02795at 558.224 kb on - strand, within CSW01_02795at 558.242 kb on + strand, within CSW01_02795at 558.242 kb on + strand, within CSW01_02795at 558.242 kb on + strand, within CSW01_02795at 558.242 kb on + strand, within CSW01_02795at 558.250 kb on - strand, within CSW01_02795at 558.250 kb on - strand, within CSW01_02795at 558.269 kb on + strand, within CSW01_02795at 558.293 kb on + strand, within CSW01_02795at 558.383 kb on - strandat 558.383 kb on - strandat 558.506 kb on - strandat 558.515 kb on + strandat 558.789 kb on + strandat 558.802 kb on + strandat 558.807 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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556,664 + CSW01_02780 0.50 +0.2
556,664 + CSW01_02780 0.50 +0.5
556,664 + CSW01_02780 0.50 +0.4
556,664 + CSW01_02780 0.50 -0.1
556,669 + CSW01_02780 0.53 -0.5
556,672 - CSW01_02780 0.55 +0.9
556,739 + +0.3
557,128 + -1.0
557,153 + +0.1
557,211 + CSW01_02790 0.21 +1.4
557,219 - CSW01_02790 0.23 +0.5
557,247 + CSW01_02790 0.28 -0.1
557,291 + CSW01_02790 0.37 +0.8
557,291 + CSW01_02790 0.37 +0.0
557,414 - CSW01_02790 0.61 -1.4
557,427 - CSW01_02790 0.64 +0.1
557,432 - CSW01_02790 0.65 +1.0
557,546 + CSW01_02790 0.87 -0.8
557,563 + -0.1
557,563 + +0.2
557,563 + -0.5
557,563 + -0.2
557,571 - +0.4
557,571 - -0.1
557,571 - -1.9
557,571 - -1.3
557,571 - -1.3
557,571 - -2.1
557,639 + -0.2
557,645 + -0.4
557,710 - CSW01_02795 0.13 +0.3
557,717 + CSW01_02795 0.14 -0.2
557,717 + CSW01_02795 0.14 -0.5
557,717 + CSW01_02795 0.14 +0.7
557,725 - CSW01_02795 0.15 +0.1
557,771 + CSW01_02795 0.21 +0.2
557,878 + CSW01_02795 0.34 +1.1
557,924 + CSW01_02795 0.40 +0.8
557,943 + CSW01_02795 0.42 +0.1
557,943 + CSW01_02795 0.42 -0.3
557,951 - CSW01_02795 0.43 +0.8
557,951 - CSW01_02795 0.43 -0.2
557,951 - CSW01_02795 0.43 -0.3
557,972 - CSW01_02795 0.46 +0.3
557,987 - CSW01_02795 0.47 +0.5
558,005 - CSW01_02795 0.50 -1.0
558,013 + CSW01_02795 0.51 +0.2
558,021 - CSW01_02795 0.52 +0.5
558,021 - CSW01_02795 0.52 -0.2
558,021 - CSW01_02795 0.52 +0.4
558,120 + CSW01_02795 0.64 -0.7
558,132 + CSW01_02795 0.65 +0.7
558,140 - CSW01_02795 0.66 -0.5
558,140 - CSW01_02795 0.66 -0.4
558,145 - CSW01_02795 0.67 -0.3
558,224 + CSW01_02795 0.77 +0.3
558,224 - CSW01_02795 0.77 -0.4
558,242 + CSW01_02795 0.79 -0.3
558,242 + CSW01_02795 0.79 +0.5
558,242 + CSW01_02795 0.79 +0.2
558,242 + CSW01_02795 0.79 -0.1
558,250 - CSW01_02795 0.80 -0.0
558,250 - CSW01_02795 0.80 -0.4
558,269 + CSW01_02795 0.82 +0.5
558,293 + CSW01_02795 0.85 -0.1
558,383 - -0.2
558,383 - -1.1
558,506 - -0.2
558,515 + +0.1
558,789 + -0.3
558,802 + +0.3
558,807 + -0.1

Or see this region's nucleotide sequence