Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02290

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02280 and CSW01_02285 are separated by 270 nucleotidesCSW01_02285 and CSW01_02290 are separated by 20 nucleotidesCSW01_02290 and CSW01_02295 are separated by 222 nucleotides CSW01_02280: CSW01_02280 - octaprenyl diphosphate synthase, at 463,948 to 464,919 _02280 CSW01_02285: CSW01_02285 - 50S ribosomal protein L21, at 465,190 to 465,501 _02285 CSW01_02290: CSW01_02290 - 50S ribosomal protein L27, at 465,522 to 465,782 _02290 CSW01_02295: CSW01_02295 - GTPase ObgE, at 466,005 to 467,177 _02295 Position (kb) 465 466Strain fitness (log2 ratio) -1 0 1at 465.004 kb on - strandat 465.008 kb on + strandat 465.008 kb on + strandat 465.875 kb on + strandat 465.882 kb on + strandat 465.882 kb on + strandat 465.889 kb on + strandat 465.896 kb on + strandat 465.896 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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465,004 - +0.1
465,008 + +0.3
465,008 + +0.6
465,875 + -1.0
465,882 + -0.2
465,882 + +0.2
465,889 + -0.5
465,896 + -0.1
465,896 + -0.4

Or see this region's nucleotide sequence