Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02230

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02225 and CSW01_02230 are separated by 726 nucleotidesCSW01_02230 and CSW01_02235 are separated by 146 nucleotides CSW01_02225: CSW01_02225 - arginine deiminase, at 451,681 to 452,904 _02225 CSW01_02230: CSW01_02230 - ribonuclease E inhibitor RraB, at 453,631 to 454,053 _02230 CSW01_02235: CSW01_02235 - hypothetical protein, at 454,200 to 454,997 _02235 Position (kb) 453 454 455Strain fitness (log2 ratio) -1 0 1at 452.658 kb on + strand, within CSW01_02225at 452.712 kb on + strand, within CSW01_02225at 452.712 kb on - strand, within CSW01_02225at 452.714 kb on + strand, within CSW01_02225at 452.720 kb on - strand, within CSW01_02225at 452.799 kb on + strandat 452.799 kb on + strandat 452.868 kb on + strandat 452.877 kb on + strandat 452.885 kb on - strandat 452.889 kb on + strandat 452.941 kb on - strandat 452.957 kb on + strandat 452.957 kb on + strandat 452.957 kb on + strandat 452.957 kb on + strandat 452.965 kb on - strandat 452.965 kb on - strandat 453.003 kb on + strandat 453.022 kb on - strandat 453.022 kb on - strandat 453.022 kb on - strandat 453.022 kb on - strandat 453.035 kb on + strandat 453.095 kb on - strandat 453.284 kb on + strandat 453.284 kb on + strandat 453.284 kb on + strandat 453.284 kb on + strandat 453.284 kb on + strandat 453.292 kb on - strandat 453.292 kb on - strandat 453.292 kb on - strandat 453.349 kb on - strandat 453.358 kb on + strandat 453.366 kb on - strandat 453.453 kb on - strandat 453.453 kb on - strandat 453.467 kb on - strandat 453.507 kb on + strandat 453.531 kb on - strandat 453.542 kb on - strandat 453.627 kb on + strandat 453.635 kb on - strandat 453.635 kb on - strandat 453.635 kb on - strandat 453.635 kb on - strandat 453.703 kb on + strand, within CSW01_02230at 453.711 kb on - strand, within CSW01_02230at 453.714 kb on + strand, within CSW01_02230at 453.878 kb on + strand, within CSW01_02230at 453.878 kb on + strand, within CSW01_02230at 453.886 kb on - strand, within CSW01_02230at 453.886 kb on - strand, within CSW01_02230at 453.886 kb on - strand, within CSW01_02230at 453.986 kb on - strand, within CSW01_02230at 454.008 kb on - strand, within CSW01_02230at 454.035 kb on - strandat 454.056 kb on - strandat 454.163 kb on + strandat 454.171 kb on - strandat 454.171 kb on - strandat 454.205 kb on - strandat 454.274 kb on - strandat 454.309 kb on - strand, within CSW01_02235at 454.357 kb on + strand, within CSW01_02235at 454.357 kb on + strand, within CSW01_02235at 454.357 kb on + strand, within CSW01_02235at 454.357 kb on + strand, within CSW01_02235at 454.365 kb on - strand, within CSW01_02235at 454.365 kb on - strand, within CSW01_02235at 454.365 kb on - strand, within CSW01_02235at 454.365 kb on - strand, within CSW01_02235at 454.439 kb on - strand, within CSW01_02235at 454.457 kb on + strand, within CSW01_02235at 454.526 kb on - strand, within CSW01_02235at 454.573 kb on + strand, within CSW01_02235at 454.606 kb on + strand, within CSW01_02235at 454.614 kb on - strand, within CSW01_02235at 454.621 kb on + strand, within CSW01_02235at 454.629 kb on - strand, within CSW01_02235at 454.629 kb on - strand, within CSW01_02235at 454.652 kb on + strand, within CSW01_02235at 454.699 kb on - strand, within CSW01_02235at 454.699 kb on - strand, within CSW01_02235at 454.767 kb on + strand, within CSW01_02235at 454.937 kb on + strandat 454.937 kb on + strandat 454.937 kb on + strandat 454.937 kb on + strandat 454.945 kb on - strandat 454.945 kb on - strandat 454.945 kb on - strandat 454.945 kb on - strandat 454.964 kb on - strandat 454.964 kb on - strandat 454.975 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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452,658 + CSW01_02225 0.80 -0.2
452,712 + CSW01_02225 0.84 -0.0
452,712 - CSW01_02225 0.84 +1.2
452,714 + CSW01_02225 0.84 +0.7
452,720 - CSW01_02225 0.85 +0.6
452,799 + -0.1
452,799 + -0.1
452,868 + +1.1
452,877 + -0.6
452,885 - +0.3
452,889 + +0.7
452,941 - -0.6
452,957 + -0.4
452,957 + +0.2
452,957 + -0.4
452,957 + +0.6
452,965 - +1.3
452,965 - +0.2
453,003 + +0.8
453,022 - +0.6
453,022 - +0.3
453,022 - -0.1
453,022 - -0.5
453,035 + -1.4
453,095 - +0.4
453,284 + -0.1
453,284 + +0.3
453,284 + +0.0
453,284 + +0.0
453,284 + -0.0
453,292 - +0.4
453,292 - +0.5
453,292 - -0.2
453,349 - -0.6
453,358 + -0.5
453,366 - +0.1
453,453 - +0.4
453,453 - +0.3
453,467 - -0.3
453,507 + +0.5
453,531 - +0.2
453,542 - -0.3
453,627 + -0.6
453,635 - +0.7
453,635 - -0.0
453,635 - -0.3
453,635 - +0.0
453,703 + CSW01_02230 0.17 -0.5
453,711 - CSW01_02230 0.19 -0.2
453,714 + CSW01_02230 0.20 -1.0
453,878 + CSW01_02230 0.58 -0.6
453,878 + CSW01_02230 0.58 +0.2
453,886 - CSW01_02230 0.60 -1.5
453,886 - CSW01_02230 0.60 -1.0
453,886 - CSW01_02230 0.60 -0.3
453,986 - CSW01_02230 0.84 -0.0
454,008 - CSW01_02230 0.89 +0.5
454,035 - +0.2
454,056 - +0.1
454,163 + +0.2
454,171 - +0.1
454,171 - +1.0
454,205 - -1.4
454,274 - -0.7
454,309 - CSW01_02235 0.14 +1.2
454,357 + CSW01_02235 0.20 +0.3
454,357 + CSW01_02235 0.20 +0.2
454,357 + CSW01_02235 0.20 -0.5
454,357 + CSW01_02235 0.20 +0.4
454,365 - CSW01_02235 0.21 -0.1
454,365 - CSW01_02235 0.21 +0.5
454,365 - CSW01_02235 0.21 +0.2
454,365 - CSW01_02235 0.21 -1.4
454,439 - CSW01_02235 0.30 -0.5
454,457 + CSW01_02235 0.32 +0.2
454,526 - CSW01_02235 0.41 -1.0
454,573 + CSW01_02235 0.47 +0.2
454,606 + CSW01_02235 0.51 -1.1
454,614 - CSW01_02235 0.52 -0.8
454,621 + CSW01_02235 0.53 +0.3
454,629 - CSW01_02235 0.54 +0.5
454,629 - CSW01_02235 0.54 +0.1
454,652 + CSW01_02235 0.57 -0.2
454,699 - CSW01_02235 0.63 -0.3
454,699 - CSW01_02235 0.63 +0.1
454,767 + CSW01_02235 0.71 +0.7
454,937 + -0.4
454,937 + -0.3
454,937 + -0.8
454,937 + +0.2
454,945 - -1.2
454,945 - -0.3
454,945 - -0.0
454,945 - +0.6
454,964 - -0.4
454,964 - +0.0
454,975 + -0.1

Or see this region's nucleotide sequence