Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01200

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01195 and CSW01_01200 are separated by 79 nucleotidesCSW01_01200 and CSW01_01205 are separated by 3 nucleotidesCSW01_01205 and CSW01_01210 are separated by 3 nucleotides CSW01_01195: CSW01_01195 - ADP-heptose--LPS heptosyltransferase I, at 230,798 to 231,871 _01195 CSW01_01200: CSW01_01200 - 3-deoxy-D-manno-octulosonic acid kinase, at 231,951 to 232,706 _01200 CSW01_01205: CSW01_01205 - wavE lipopolysaccharide synthesis family protein, at 232,710 to 233,669 _01205 CSW01_01210: CSW01_01210 - LPS biosynthesis protein WavE, at 233,673 to 234,602 _01210 Position (kb) 231 232 233Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 230.997 kb on + strand, within CSW01_01195at 230.997 kb on + strand, within CSW01_01195at 231.005 kb on - strand, within CSW01_01195at 231.009 kb on + strand, within CSW01_01195at 231.009 kb on + strand, within CSW01_01195at 231.009 kb on + strand, within CSW01_01195at 231.017 kb on - strand, within CSW01_01195at 231.017 kb on - strand, within CSW01_01195at 231.017 kb on - strand, within CSW01_01195at 231.149 kb on + strand, within CSW01_01195at 231.149 kb on + strand, within CSW01_01195at 231.265 kb on + strand, within CSW01_01195at 231.275 kb on + strand, within CSW01_01195at 231.283 kb on - strand, within CSW01_01195at 231.283 kb on - strand, within CSW01_01195at 231.285 kb on + strand, within CSW01_01195at 231.293 kb on - strand, within CSW01_01195at 231.301 kb on - strand, within CSW01_01195at 231.327 kb on + strand, within CSW01_01195at 231.383 kb on + strand, within CSW01_01195at 231.428 kb on - strand, within CSW01_01195at 231.710 kb on - strand, within CSW01_01195at 231.836 kb on - strandat 231.847 kb on - strandat 231.847 kb on - strandat 231.847 kb on - strandat 231.847 kb on - strandat 231.847 kb on - strandat 231.847 kb on - strandat 231.849 kb on + strandat 231.857 kb on - strandat 231.857 kb on - strandat 231.857 kb on - strandat 231.857 kb on - strandat 231.857 kb on - strandat 231.866 kb on + strandat 231.874 kb on - strandat 231.874 kb on - strandat 231.874 kb on - strandat 231.892 kb on + strandat 231.906 kb on + strandat 231.911 kb on + strandat 231.919 kb on - strandat 231.964 kb on + strandat 232.648 kb on + strandat 232.660 kb on + strandat 232.660 kb on + strandat 232.724 kb on + strandat 232.738 kb on + strandat 232.746 kb on + strandat 232.746 kb on + strandat 232.747 kb on + strandat 232.747 kb on + strandat 232.747 kb on + strandat 232.747 kb on + strandat 232.747 kb on + strandat 232.747 kb on + strandat 232.747 kb on + strandat 232.747 kb on + strandat 232.747 kb on + strandat 232.747 kb on + strandat 232.747 kb on + strandat 232.747 kb on + strandat 232.747 kb on + strandat 232.747 kb on + strandat 232.747 kb on + strandat 232.747 kb on + strandat 232.747 kb on + strandat 232.747 kb on + strandat 232.747 kb on + strandat 232.747 kb on + strandat 232.747 kb on + strandat 232.747 kb on + strandat 232.747 kb on + strandat 232.747 kb on + strandat 232.747 kb on + strandat 232.747 kb on + strandat 232.747 kb on + strandat 232.747 kb on + strandat 232.747 kb on + strandat 232.747 kb on + strandat 232.747 kb on + strandat 232.747 kb on + strandat 232.747 kb on + strandat 232.747 kb on + strandat 232.747 kb on + strandat 232.747 kb on + strandat 232.747 kb on + strandat 232.747 kb on + strandat 232.749 kb on + strandat 232.755 kb on + strandat 232.755 kb on - strandat 232.755 kb on - strandat 232.755 kb on - strandat 232.755 kb on - strandat 232.755 kb on - strandat 232.755 kb on - strandat 232.755 kb on - strandat 232.755 kb on - strandat 232.755 kb on - strandat 232.755 kb on - strandat 232.755 kb on - strandat 232.755 kb on - strandat 232.755 kb on - strandat 232.755 kb on - strandat 232.755 kb on - strandat 232.755 kb on - strandat 232.755 kb on - strandat 232.755 kb on - strandat 232.755 kb on - strandat 232.755 kb on - strandat 232.755 kb on - strandat 232.757 kb on + strandat 232.765 kb on - strandat 232.766 kb on + strandat 232.766 kb on + strandat 232.766 kb on + strandat 232.766 kb on + strandat 232.766 kb on + strandat 232.766 kb on + strandat 232.766 kb on + strandat 232.766 kb on + strandat 232.766 kb on + strandat 232.766 kb on - strandat 232.771 kb on + strandat 232.771 kb on + strandat 232.774 kb on + strandat 232.774 kb on - strandat 232.774 kb on - strandat 232.774 kb on - strandat 232.774 kb on - strandat 232.774 kb on - strandat 232.779 kb on - strandat 232.779 kb on - strandat 232.923 kb on + strand, within CSW01_01205at 232.968 kb on + strand, within CSW01_01205at 232.968 kb on + strand, within CSW01_01205at 232.968 kb on + strand, within CSW01_01205at 232.968 kb on + strand, within CSW01_01205at 232.968 kb on + strand, within CSW01_01205at 232.976 kb on - strand, within CSW01_01205at 232.976 kb on - strand, within CSW01_01205at 232.976 kb on - strand, within CSW01_01205at 232.976 kb on - strand, within CSW01_01205at 232.976 kb on - strand, within CSW01_01205at 233.011 kb on - strand, within CSW01_01205at 233.074 kb on - strand, within CSW01_01205at 233.075 kb on + strand, within CSW01_01205at 233.075 kb on + strand, within CSW01_01205at 233.075 kb on + strand, within CSW01_01205at 233.075 kb on + strand, within CSW01_01205at 233.075 kb on + strand, within CSW01_01205at 233.075 kb on + strand, within CSW01_01205at 233.075 kb on + strand, within CSW01_01205at 233.083 kb on - strand, within CSW01_01205at 233.083 kb on - strand, within CSW01_01205at 233.083 kb on - strand, within CSW01_01205at 233.085 kb on + strand, within CSW01_01205at 233.085 kb on + strand, within CSW01_01205at 233.085 kb on - strand, within CSW01_01205at 233.088 kb on - strand, within CSW01_01205at 233.093 kb on + strand, within CSW01_01205at 233.093 kb on - strand, within CSW01_01205at 233.093 kb on - strand, within CSW01_01205at 233.093 kb on - strand, within CSW01_01205at 233.093 kb on - strand, within CSW01_01205at 233.098 kb on + strand, within CSW01_01205at 233.135 kb on - strand, within CSW01_01205at 233.137 kb on - strand, within CSW01_01205at 233.137 kb on - strand, within CSW01_01205at 233.139 kb on + strand, within CSW01_01205at 233.139 kb on + strand, within CSW01_01205at 233.139 kb on + strand, within CSW01_01205at 233.144 kb on + strand, within CSW01_01205at 233.144 kb on + strand, within CSW01_01205at 233.146 kb on + strand, within CSW01_01205at 233.147 kb on - strand, within CSW01_01205at 233.147 kb on - strand, within CSW01_01205at 233.147 kb on - strand, within CSW01_01205at 233.148 kb on - strand, within CSW01_01205at 233.148 kb on - strand, within CSW01_01205at 233.152 kb on - strand, within CSW01_01205at 233.154 kb on - strand, within CSW01_01205at 233.176 kb on + strand, within CSW01_01205at 233.186 kb on + strand, within CSW01_01205at 233.186 kb on + strand, within CSW01_01205at 233.186 kb on + strand, within CSW01_01205at 233.186 kb on + strand, within CSW01_01205at 233.186 kb on + strand, within CSW01_01205at 233.186 kb on + strand, within CSW01_01205at 233.194 kb on - strand, within CSW01_01205at 233.194 kb on - strand, within CSW01_01205at 233.194 kb on - strand, within CSW01_01205at 233.194 kb on - strand, within CSW01_01205at 233.194 kb on - strand, within CSW01_01205at 233.195 kb on - strand, within CSW01_01205at 233.195 kb on - strand, within CSW01_01205at 233.195 kb on - strand, within CSW01_01205at 233.201 kb on - strand, within CSW01_01205at 233.225 kb on - strand, within CSW01_01205at 233.225 kb on - strand, within CSW01_01205at 233.242 kb on + strand, within CSW01_01205at 233.242 kb on + strand, within CSW01_01205at 233.247 kb on + strand, within CSW01_01205at 233.255 kb on - strand, within CSW01_01205at 233.257 kb on + strand, within CSW01_01205at 233.257 kb on + strand, within CSW01_01205at 233.257 kb on + strand, within CSW01_01205at 233.257 kb on + strand, within CSW01_01205at 233.257 kb on + strand, within CSW01_01205at 233.265 kb on - strand, within CSW01_01205at 233.265 kb on - strand, within CSW01_01205at 233.265 kb on - strand, within CSW01_01205at 233.265 kb on - strand, within CSW01_01205at 233.267 kb on + strand, within CSW01_01205at 233.275 kb on - strand, within CSW01_01205at 233.290 kb on + strand, within CSW01_01205at 233.290 kb on + strand, within CSW01_01205at 233.290 kb on + strand, within CSW01_01205at 233.290 kb on + strand, within CSW01_01205at 233.290 kb on + strand, within CSW01_01205at 233.290 kb on + strand, within CSW01_01205at 233.298 kb on - strand, within CSW01_01205at 233.298 kb on - strand, within CSW01_01205at 233.428 kb on + strand, within CSW01_01205at 233.428 kb on + strand, within CSW01_01205at 233.430 kb on + strand, within CSW01_01205at 233.430 kb on + strand, within CSW01_01205at 233.430 kb on + strand, within CSW01_01205at 233.436 kb on - strand, within CSW01_01205at 233.439 kb on + strand, within CSW01_01205at 233.439 kb on + strand, within CSW01_01205at 233.439 kb on + strand, within CSW01_01205at 233.439 kb on + strand, within CSW01_01205at 233.439 kb on + strand, within CSW01_01205at 233.439 kb on + strand, within CSW01_01205at 233.440 kb on + strand, within CSW01_01205at 233.440 kb on + strand, within CSW01_01205at 233.440 kb on + strand, within CSW01_01205at 233.440 kb on + strand, within CSW01_01205at 233.440 kb on + strand, within CSW01_01205at 233.447 kb on - strand, within CSW01_01205at 233.447 kb on - strand, within CSW01_01205at 233.451 kb on + strand, within CSW01_01205at 233.458 kb on - strand, within CSW01_01205at 233.459 kb on - strand, within CSW01_01205at 233.477 kb on - strand, within CSW01_01205at 233.482 kb on - strand, within CSW01_01205at 233.506 kb on + strand, within CSW01_01205at 233.514 kb on - strand, within CSW01_01205at 233.553 kb on + strand, within CSW01_01205

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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230,997 + CSW01_01195 0.19 -3.0
230,997 + CSW01_01195 0.19 -1.5
231,005 - CSW01_01195 0.19 -2.2
231,009 + CSW01_01195 0.20 -3.5
231,009 + CSW01_01195 0.20 -2.2
231,009 + CSW01_01195 0.20 -2.8
231,017 - CSW01_01195 0.20 -3.8
231,017 - CSW01_01195 0.20 +0.6
231,017 - CSW01_01195 0.20 -0.5
231,149 + CSW01_01195 0.33 -1.7
231,149 + CSW01_01195 0.33 -3.0
231,265 + CSW01_01195 0.43 -3.2
231,275 + CSW01_01195 0.44 -2.9
231,283 - CSW01_01195 0.45 -1.1
231,283 - CSW01_01195 0.45 -2.2
231,285 + CSW01_01195 0.45 -1.3
231,293 - CSW01_01195 0.46 -2.7
231,301 - CSW01_01195 0.47 -1.4
231,327 + CSW01_01195 0.49 -2.1
231,383 + CSW01_01195 0.54 -0.4
231,428 - CSW01_01195 0.59 -3.8
231,710 - CSW01_01195 0.85 -1.3
231,836 - -0.2
231,847 - -0.2
231,847 - -0.6
231,847 - -1.5
231,847 - -1.9
231,847 - -1.9
231,847 - -0.2
231,849 + -1.9
231,857 - +0.2
231,857 - -0.5
231,857 - -0.7
231,857 - -1.1
231,857 - -0.8
231,866 + -0.5
231,874 - -0.3
231,874 - -0.4
231,874 - -0.4
231,892 + +1.0
231,906 + +0.8
231,911 + -0.8
231,919 - +0.4
231,964 + -0.4
232,648 + +0.2
232,660 + -0.0
232,660 + -0.4
232,724 + -0.3
232,738 + -0.5
232,746 + -0.1
232,746 + -0.4
232,747 + +0.3
232,747 + +0.1
232,747 + -0.7
232,747 + -0.7
232,747 + -0.1
232,747 + -0.1
232,747 + +0.0
232,747 + +0.2
232,747 + -0.3
232,747 + -2.5
232,747 + -0.2
232,747 + -0.2
232,747 + -0.1
232,747 + +0.4
232,747 + +0.1
232,747 + -1.0
232,747 + -0.1
232,747 + -0.1
232,747 + -0.2
232,747 + +0.2
232,747 + -0.2
232,747 + -0.7
232,747 + +0.6
232,747 + +0.5
232,747 + +2.5
232,747 + -0.3
232,747 + -0.0
232,747 + +0.6
232,747 + -0.1
232,747 + -0.0
232,747 + -0.2
232,747 + +0.6
232,747 + +0.2
232,747 + -0.2
232,747 + +0.2
232,747 + -0.0
232,747 + +0.7
232,747 + +0.1
232,749 + -1.0
232,755 + -0.2
232,755 - -0.6
232,755 - -0.6
232,755 - +0.3
232,755 - +0.5
232,755 - +0.2
232,755 - +0.2
232,755 - -0.7
232,755 - -0.7
232,755 - -0.0
232,755 - +0.1
232,755 - +0.7
232,755 - +0.9
232,755 - -0.2
232,755 - -0.4
232,755 - -0.2
232,755 - +0.2
232,755 - -0.1
232,755 - +0.0
232,755 - +0.1
232,755 - -0.4
232,755 - -0.2
232,757 + +0.1
232,765 - -0.5
232,766 + +0.1
232,766 + -0.2
232,766 + +0.2
232,766 + -1.0
232,766 + +0.5
232,766 + +0.1
232,766 + -0.2
232,766 + -0.7
232,766 + +0.6
232,766 - -0.1
232,771 + +0.1
232,771 + -0.4
232,774 + -0.4
232,774 - -0.2
232,774 - +0.5
232,774 - +0.2
232,774 - +1.4
232,774 - +0.1
232,779 - -0.4
232,779 - -0.1
232,923 + CSW01_01205 0.22 +0.3
232,968 + CSW01_01205 0.27 -0.4
232,968 + CSW01_01205 0.27 -0.9
232,968 + CSW01_01205 0.27 -1.1
232,968 + CSW01_01205 0.27 -0.1
232,968 + CSW01_01205 0.27 -0.1
232,976 - CSW01_01205 0.28 +0.0
232,976 - CSW01_01205 0.28 +0.4
232,976 - CSW01_01205 0.28 -0.1
232,976 - CSW01_01205 0.28 +0.2
232,976 - CSW01_01205 0.28 -0.1
233,011 - CSW01_01205 0.31 -0.1
233,074 - CSW01_01205 0.38 -0.1
233,075 + CSW01_01205 0.38 -1.0
233,075 + CSW01_01205 0.38 +0.1
233,075 + CSW01_01205 0.38 +0.1
233,075 + CSW01_01205 0.38 +0.2
233,075 + CSW01_01205 0.38 +0.1
233,075 + CSW01_01205 0.38 +0.8
233,075 + CSW01_01205 0.38 +0.0
233,083 - CSW01_01205 0.39 +0.5
233,083 - CSW01_01205 0.39 -0.6
233,083 - CSW01_01205 0.39 +0.4
233,085 + CSW01_01205 0.39 +0.3
233,085 + CSW01_01205 0.39 +0.6
233,085 - CSW01_01205 0.39 +0.3
233,088 - CSW01_01205 0.39 +0.5
233,093 + CSW01_01205 0.40 -0.8
233,093 - CSW01_01205 0.40 -0.2
233,093 - CSW01_01205 0.40 +0.3
233,093 - CSW01_01205 0.40 -0.1
233,093 - CSW01_01205 0.40 -0.4
233,098 + CSW01_01205 0.40 -0.4
233,135 - CSW01_01205 0.44 -0.5
233,137 - CSW01_01205 0.44 +0.0
233,137 - CSW01_01205 0.44 +0.1
233,139 + CSW01_01205 0.45 +0.1
233,139 + CSW01_01205 0.45 +0.3
233,139 + CSW01_01205 0.45 +0.2
233,144 + CSW01_01205 0.45 +0.1
233,144 + CSW01_01205 0.45 -0.2
233,146 + CSW01_01205 0.45 -0.2
233,147 - CSW01_01205 0.46 +0.1
233,147 - CSW01_01205 0.46 -0.2
233,147 - CSW01_01205 0.46 -0.1
233,148 - CSW01_01205 0.46 -0.5
233,148 - CSW01_01205 0.46 -0.4
233,152 - CSW01_01205 0.46 -1.0
233,154 - CSW01_01205 0.46 +0.3
233,176 + CSW01_01205 0.49 -1.0
233,186 + CSW01_01205 0.50 +0.3
233,186 + CSW01_01205 0.50 +0.3
233,186 + CSW01_01205 0.50 +0.8
233,186 + CSW01_01205 0.50 -0.0
233,186 + CSW01_01205 0.50 +0.9
233,186 + CSW01_01205 0.50 -0.0
233,194 - CSW01_01205 0.50 -0.5
233,194 - CSW01_01205 0.50 -0.5
233,194 - CSW01_01205 0.50 +0.1
233,194 - CSW01_01205 0.50 -0.6
233,194 - CSW01_01205 0.50 -0.2
233,195 - CSW01_01205 0.51 -0.1
233,195 - CSW01_01205 0.51 -0.5
233,195 - CSW01_01205 0.51 -0.1
233,201 - CSW01_01205 0.51 -0.9
233,225 - CSW01_01205 0.54 +0.2
233,225 - CSW01_01205 0.54 +0.4
233,242 + CSW01_01205 0.55 +0.0
233,242 + CSW01_01205 0.55 +0.4
233,247 + CSW01_01205 0.56 +0.4
233,255 - CSW01_01205 0.57 +0.1
233,257 + CSW01_01205 0.57 +0.7
233,257 + CSW01_01205 0.57 +0.3
233,257 + CSW01_01205 0.57 -0.0
233,257 + CSW01_01205 0.57 +0.7
233,257 + CSW01_01205 0.57 -0.1
233,265 - CSW01_01205 0.58 +0.6
233,265 - CSW01_01205 0.58 -0.0
233,265 - CSW01_01205 0.58 -0.0
233,265 - CSW01_01205 0.58 -0.7
233,267 + CSW01_01205 0.58 +0.3
233,275 - CSW01_01205 0.59 -0.1
233,290 + CSW01_01205 0.60 -0.1
233,290 + CSW01_01205 0.60 -1.8
233,290 + CSW01_01205 0.60 -0.0
233,290 + CSW01_01205 0.60 +0.4
233,290 + CSW01_01205 0.60 +0.3
233,290 + CSW01_01205 0.60 -0.1
233,298 - CSW01_01205 0.61 -0.5
233,298 - CSW01_01205 0.61 -1.2
233,428 + CSW01_01205 0.75 +0.4
233,428 + CSW01_01205 0.75 -0.2
233,430 + CSW01_01205 0.75 +0.0
233,430 + CSW01_01205 0.75 +0.3
233,430 + CSW01_01205 0.75 +0.3
233,436 - CSW01_01205 0.76 -0.2
233,439 + CSW01_01205 0.76 +0.3
233,439 + CSW01_01205 0.76 -0.1
233,439 + CSW01_01205 0.76 -0.7
233,439 + CSW01_01205 0.76 +0.2
233,439 + CSW01_01205 0.76 +0.2
233,439 + CSW01_01205 0.76 -0.5
233,440 + CSW01_01205 0.76 +0.1
233,440 + CSW01_01205 0.76 +0.1
233,440 + CSW01_01205 0.76 +0.3
233,440 + CSW01_01205 0.76 -0.5
233,440 + CSW01_01205 0.76 -0.5
233,447 - CSW01_01205 0.77 -0.5
233,447 - CSW01_01205 0.77 -0.4
233,451 + CSW01_01205 0.77 -0.1
233,458 - CSW01_01205 0.78 -0.4
233,459 - CSW01_01205 0.78 +0.6
233,477 - CSW01_01205 0.80 -0.4
233,482 - CSW01_01205 0.80 -0.2
233,506 + CSW01_01205 0.83 +0.2
233,514 - CSW01_01205 0.84 -0.4
233,553 + CSW01_01205 0.88 -0.1

Or see this region's nucleotide sequence