Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00485

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00480 and CSW01_00485 are separated by 70 nucleotidesCSW01_00485 and CSW01_00490 are separated by 27 nucleotidesCSW01_00490 and CSW01_00495 overlap by 38 nucleotidesCSW01_00495 and CSW01_00500 are separated by 168 nucleotides CSW01_00480: CSW01_00480 - MATE family efflux transporter, at 87,682 to 89,046 _00480 CSW01_00485: CSW01_00485 - class I SAM-dependent methyltransferase, at 89,117 to 89,986 _00485 CSW01_00490: CSW01_00490 - repressor LexA, at 90,014 to 90,643 _00490 CSW01_00495: CSW01_00495 - SOS-response transcriptional repressor, at 90,606 to 90,794 _00495 CSW01_00500: CSW01_00500 - glycerol-3-phosphate 1-O-acyltransferase, at 90,963 to 93,389 _00500 Position (kb) 89 90Strain fitness (log2 ratio) -2 -1 0 1 2at 88.153 kb on + strand, within CSW01_00480at 88.195 kb on + strand, within CSW01_00480at 88.228 kb on + strand, within CSW01_00480at 88.266 kb on - strand, within CSW01_00480at 88.275 kb on + strand, within CSW01_00480at 88.277 kb on - strand, within CSW01_00480at 88.296 kb on - strand, within CSW01_00480at 88.328 kb on - strand, within CSW01_00480at 88.354 kb on + strand, within CSW01_00480at 88.399 kb on + strand, within CSW01_00480at 88.411 kb on + strand, within CSW01_00480at 88.419 kb on - strand, within CSW01_00480at 88.467 kb on + strand, within CSW01_00480at 88.467 kb on + strand, within CSW01_00480at 88.467 kb on + strand, within CSW01_00480at 88.520 kb on - strand, within CSW01_00480at 88.576 kb on - strand, within CSW01_00480at 88.578 kb on + strand, within CSW01_00480at 88.586 kb on - strand, within CSW01_00480at 88.586 kb on - strand, within CSW01_00480at 88.586 kb on - strand, within CSW01_00480at 88.591 kb on - strand, within CSW01_00480at 88.591 kb on - strand, within CSW01_00480at 88.591 kb on - strand, within CSW01_00480at 88.607 kb on + strand, within CSW01_00480at 88.607 kb on + strand, within CSW01_00480at 88.642 kb on + strand, within CSW01_00480at 88.642 kb on + strand, within CSW01_00480at 88.687 kb on + strand, within CSW01_00480at 88.721 kb on + strand, within CSW01_00480at 88.721 kb on + strand, within CSW01_00480at 88.721 kb on + strand, within CSW01_00480at 88.729 kb on - strand, within CSW01_00480at 88.729 kb on - strand, within CSW01_00480at 88.729 kb on - strand, within CSW01_00480at 88.729 kb on - strand, within CSW01_00480at 88.729 kb on - strand, within CSW01_00480at 88.729 kb on - strand, within CSW01_00480at 88.729 kb on - strand, within CSW01_00480at 88.729 kb on - strand, within CSW01_00480at 88.729 kb on - strand, within CSW01_00480at 88.739 kb on - strand, within CSW01_00480at 88.752 kb on - strand, within CSW01_00480at 88.787 kb on + strand, within CSW01_00480at 88.795 kb on - strand, within CSW01_00480at 88.809 kb on - strand, within CSW01_00480at 88.863 kb on - strand, within CSW01_00480at 88.863 kb on - strand, within CSW01_00480at 88.872 kb on + strand, within CSW01_00480at 88.880 kb on - strand, within CSW01_00480at 88.880 kb on - strand, within CSW01_00480at 88.891 kb on - strand, within CSW01_00480at 88.917 kb on + strandat 88.935 kb on - strandat 88.941 kb on + strandat 88.964 kb on + strandat 88.964 kb on + strandat 88.972 kb on - strandat 88.972 kb on - strandat 88.972 kb on - strandat 88.972 kb on - strandat 89.010 kb on + strandat 89.018 kb on - strandat 89.054 kb on - strandat 89.068 kb on + strandat 89.068 kb on + strandat 89.068 kb on + strandat 89.068 kb on + strandat 89.068 kb on + strandat 89.076 kb on - strandat 89.076 kb on - strandat 89.076 kb on - strandat 89.076 kb on - strandat 89.076 kb on - strandat 89.076 kb on - strandat 89.076 kb on - strandat 89.076 kb on - strandat 89.152 kb on - strandat 89.283 kb on - strand, within CSW01_00485at 89.285 kb on + strand, within CSW01_00485at 89.285 kb on + strand, within CSW01_00485at 89.285 kb on + strand, within CSW01_00485at 89.292 kb on - strand, within CSW01_00485at 89.305 kb on - strand, within CSW01_00485at 89.340 kb on + strand, within CSW01_00485at 89.348 kb on - strand, within CSW01_00485at 89.356 kb on + strand, within CSW01_00485at 89.547 kb on - strand, within CSW01_00485at 89.639 kb on + strand, within CSW01_00485at 89.639 kb on + strand, within CSW01_00485at 89.647 kb on - strand, within CSW01_00485at 89.647 kb on - strand, within CSW01_00485at 89.779 kb on - strand, within CSW01_00485at 89.779 kb on - strand, within CSW01_00485at 89.784 kb on + strand, within CSW01_00485at 89.817 kb on + strand, within CSW01_00485at 89.843 kb on + strand, within CSW01_00485at 89.844 kb on - strand, within CSW01_00485at 89.899 kb on + strand, within CSW01_00485at 89.899 kb on + strand, within CSW01_00485at 89.899 kb on + strand, within CSW01_00485at 89.899 kb on + strand, within CSW01_00485at 89.899 kb on + strand, within CSW01_00485at 89.899 kb on + strand, within CSW01_00485at 89.907 kb on - strandat 89.907 kb on - strandat 89.907 kb on - strandat 89.907 kb on - strandat 89.907 kb on - strandat 89.914 kb on + strandat 89.917 kb on - strandat 90.019 kb on + strandat 90.027 kb on - strandat 90.027 kb on - strandat 90.037 kb on - strandat 90.175 kb on - strand, within CSW01_00490at 90.746 kb on + strand, within CSW01_00495at 90.766 kb on - strand, within CSW01_00495at 90.809 kb on - strandat 90.901 kb on - strandat 90.959 kb on - strandat 90.967 kb on + strandat 90.975 kb on - strandat 90.978 kb on + strandat 90.986 kb on - strandat 90.986 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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88,153 + CSW01_00480 0.35 -0.5
88,195 + CSW01_00480 0.38 +0.2
88,228 + CSW01_00480 0.40 -0.2
88,266 - CSW01_00480 0.43 +0.2
88,275 + CSW01_00480 0.43 +1.6
88,277 - CSW01_00480 0.44 +0.1
88,296 - CSW01_00480 0.45 +0.4
88,328 - CSW01_00480 0.47 +0.7
88,354 + CSW01_00480 0.49 -1.1
88,399 + CSW01_00480 0.53 +0.4
88,411 + CSW01_00480 0.53 -0.9
88,419 - CSW01_00480 0.54 +0.1
88,467 + CSW01_00480 0.58 +0.7
88,467 + CSW01_00480 0.58 +0.7
88,467 + CSW01_00480 0.58 -0.1
88,520 - CSW01_00480 0.61 +0.2
88,576 - CSW01_00480 0.65 +0.2
88,578 + CSW01_00480 0.66 +0.1
88,586 - CSW01_00480 0.66 -0.1
88,586 - CSW01_00480 0.66 +0.1
88,586 - CSW01_00480 0.66 +0.4
88,591 - CSW01_00480 0.67 +0.0
88,591 - CSW01_00480 0.67 +0.5
88,591 - CSW01_00480 0.67 -0.2
88,607 + CSW01_00480 0.68 +0.1
88,607 + CSW01_00480 0.68 -0.1
88,642 + CSW01_00480 0.70 -0.4
88,642 + CSW01_00480 0.70 -0.4
88,687 + CSW01_00480 0.74 +0.2
88,721 + CSW01_00480 0.76 +0.2
88,721 + CSW01_00480 0.76 +0.0
88,721 + CSW01_00480 0.76 +0.4
88,729 - CSW01_00480 0.77 -0.1
88,729 - CSW01_00480 0.77 +0.5
88,729 - CSW01_00480 0.77 +1.1
88,729 - CSW01_00480 0.77 -0.0
88,729 - CSW01_00480 0.77 -0.1
88,729 - CSW01_00480 0.77 +0.2
88,729 - CSW01_00480 0.77 -0.6
88,729 - CSW01_00480 0.77 +1.3
88,729 - CSW01_00480 0.77 +0.3
88,739 - CSW01_00480 0.77 +0.5
88,752 - CSW01_00480 0.78 +0.4
88,787 + CSW01_00480 0.81 +1.2
88,795 - CSW01_00480 0.82 -0.6
88,809 - CSW01_00480 0.83 +0.4
88,863 - CSW01_00480 0.87 -0.4
88,863 - CSW01_00480 0.87 +0.4
88,872 + CSW01_00480 0.87 -0.5
88,880 - CSW01_00480 0.88 +0.8
88,880 - CSW01_00480 0.88 +0.5
88,891 - CSW01_00480 0.89 -0.0
88,917 + +1.5
88,935 - +0.6
88,941 + +0.1
88,964 + +0.3
88,964 + +0.1
88,972 - +0.9
88,972 - -0.1
88,972 - +0.5
88,972 - +0.4
89,010 + +1.0
89,018 - -0.2
89,054 - -1.7
89,068 + -1.3
89,068 + +1.2
89,068 + +0.4
89,068 + +0.2
89,068 + -0.9
89,076 - +0.6
89,076 - -0.3
89,076 - +1.8
89,076 - -0.5
89,076 - -0.4
89,076 - -0.2
89,076 - +0.3
89,076 - -0.5
89,152 - +0.4
89,283 - CSW01_00485 0.19 +0.1
89,285 + CSW01_00485 0.19 +0.5
89,285 + CSW01_00485 0.19 +0.4
89,285 + CSW01_00485 0.19 -0.4
89,292 - CSW01_00485 0.20 -0.6
89,305 - CSW01_00485 0.22 +0.2
89,340 + CSW01_00485 0.26 +0.1
89,348 - CSW01_00485 0.27 -0.4
89,356 + CSW01_00485 0.27 -0.5
89,547 - CSW01_00485 0.49 +0.5
89,639 + CSW01_00485 0.60 -0.6
89,639 + CSW01_00485 0.60 -0.9
89,647 - CSW01_00485 0.61 -0.0
89,647 - CSW01_00485 0.61 +1.1
89,779 - CSW01_00485 0.76 +0.1
89,779 - CSW01_00485 0.76 +0.9
89,784 + CSW01_00485 0.77 -0.1
89,817 + CSW01_00485 0.80 +0.2
89,843 + CSW01_00485 0.83 -0.4
89,844 - CSW01_00485 0.84 -0.1
89,899 + CSW01_00485 0.90 -0.2
89,899 + CSW01_00485 0.90 -0.2
89,899 + CSW01_00485 0.90 -0.2
89,899 + CSW01_00485 0.90 +0.6
89,899 + CSW01_00485 0.90 +0.3
89,899 + CSW01_00485 0.90 +0.5
89,907 - -0.1
89,907 - -0.6
89,907 - -0.2
89,907 - -0.5
89,907 - +0.2
89,914 + +0.5
89,917 - +0.9
90,019 + +0.1
90,027 - -0.1
90,027 - -0.1
90,037 - -1.3
90,175 - CSW01_00490 0.26 -1.9
90,746 + CSW01_00495 0.74 +0.1
90,766 - CSW01_00495 0.85 +0.9
90,809 - -0.9
90,901 - +0.6
90,959 - +0.2
90,967 + +1.4
90,975 - +0.4
90,978 + +0.9
90,986 - +0.5
90,986 - -0.7

Or see this region's nucleotide sequence