Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00430

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00420 and CSW01_00425 are separated by 75 nucleotidesCSW01_00425 and CSW01_00430 are separated by 132 nucleotidesCSW01_00430 and CSW01_00435 overlap by 4 nucleotides CSW01_00420: CSW01_00420 - ferritin, at 76,801 to 77,328 _00420 CSW01_00425: CSW01_00425 - universal stress protein B, at 77,404 to 77,727 _00425 CSW01_00430: CSW01_00430 - NAD(P)/FAD-dependent oxidoreductase, at 77,860 to 79,056 _00430 CSW01_00435: CSW01_00435 - EamA/RhaT family transporter, at 79,053 to 79,964 _00435 Position (kb) 77 78 79 80Strain fitness (log2 ratio) -2 -1 0 1at 76.897 kb on + strand, within CSW01_00420at 76.923 kb on - strand, within CSW01_00420at 76.931 kb on - strand, within CSW01_00420at 76.976 kb on - strand, within CSW01_00420at 77.006 kb on + strand, within CSW01_00420at 77.049 kb on + strand, within CSW01_00420at 77.129 kb on + strand, within CSW01_00420at 77.130 kb on - strand, within CSW01_00420at 77.137 kb on - strand, within CSW01_00420at 77.146 kb on + strand, within CSW01_00420at 77.171 kb on + strand, within CSW01_00420at 77.179 kb on - strand, within CSW01_00420at 77.179 kb on - strand, within CSW01_00420at 77.179 kb on - strand, within CSW01_00420at 77.181 kb on + strand, within CSW01_00420at 77.181 kb on + strand, within CSW01_00420at 77.189 kb on - strand, within CSW01_00420at 77.219 kb on + strand, within CSW01_00420at 77.219 kb on + strand, within CSW01_00420at 77.219 kb on + strand, within CSW01_00420at 77.219 kb on + strand, within CSW01_00420at 77.219 kb on + strand, within CSW01_00420at 77.219 kb on + strand, within CSW01_00420at 77.219 kb on + strand, within CSW01_00420at 77.219 kb on + strand, within CSW01_00420at 77.219 kb on + strand, within CSW01_00420at 77.227 kb on - strand, within CSW01_00420at 77.227 kb on - strand, within CSW01_00420at 77.227 kb on - strand, within CSW01_00420at 77.387 kb on - strandat 77.395 kb on - strandat 77.429 kb on - strandat 77.474 kb on - strand, within CSW01_00425at 77.515 kb on - strand, within CSW01_00425at 77.546 kb on + strand, within CSW01_00425at 77.565 kb on - strand, within CSW01_00425at 77.565 kb on - strand, within CSW01_00425at 77.606 kb on + strand, within CSW01_00425at 77.614 kb on - strand, within CSW01_00425at 77.657 kb on + strand, within CSW01_00425at 77.657 kb on - strand, within CSW01_00425at 77.695 kb on + strandat 77.697 kb on - strandat 77.703 kb on - strandat 77.703 kb on - strandat 77.781 kb on - strandat 77.816 kb on + strandat 77.823 kb on + strandat 77.824 kb on - strandat 77.824 kb on - strandat 77.866 kb on + strandat 77.879 kb on - strandat 77.914 kb on + strandat 77.914 kb on + strandat 77.914 kb on + strandat 77.927 kb on - strandat 77.932 kb on - strandat 77.932 kb on - strandat 77.954 kb on + strandat 78.067 kb on + strand, within CSW01_00430at 78.145 kb on + strand, within CSW01_00430at 78.146 kb on + strand, within CSW01_00430at 78.146 kb on + strand, within CSW01_00430at 78.146 kb on + strand, within CSW01_00430at 78.146 kb on + strand, within CSW01_00430at 78.146 kb on + strand, within CSW01_00430at 78.154 kb on - strand, within CSW01_00430at 78.154 kb on - strand, within CSW01_00430at 78.154 kb on - strand, within CSW01_00430at 78.154 kb on - strand, within CSW01_00430at 78.182 kb on - strand, within CSW01_00430at 78.182 kb on - strand, within CSW01_00430at 78.208 kb on + strand, within CSW01_00430at 78.221 kb on + strand, within CSW01_00430at 78.228 kb on - strand, within CSW01_00430at 78.231 kb on + strand, within CSW01_00430at 78.232 kb on - strand, within CSW01_00430at 78.259 kb on - strand, within CSW01_00430at 78.269 kb on + strand, within CSW01_00430at 78.273 kb on + strand, within CSW01_00430at 78.277 kb on - strand, within CSW01_00430at 78.279 kb on - strand, within CSW01_00430at 78.281 kb on - strand, within CSW01_00430at 78.290 kb on + strand, within CSW01_00430at 78.290 kb on + strand, within CSW01_00430at 78.290 kb on + strand, within CSW01_00430at 78.298 kb on - strand, within CSW01_00430at 78.298 kb on - strand, within CSW01_00430at 78.298 kb on - strand, within CSW01_00430at 78.339 kb on + strand, within CSW01_00430at 78.418 kb on + strand, within CSW01_00430at 78.439 kb on + strand, within CSW01_00430at 78.439 kb on + strand, within CSW01_00430at 78.439 kb on + strand, within CSW01_00430at 78.447 kb on - strand, within CSW01_00430at 78.470 kb on + strand, within CSW01_00430at 78.489 kb on + strand, within CSW01_00430at 78.539 kb on + strand, within CSW01_00430at 78.550 kb on + strand, within CSW01_00430at 78.664 kb on + strand, within CSW01_00430at 78.800 kb on + strand, within CSW01_00430at 78.800 kb on + strand, within CSW01_00430at 78.800 kb on + strand, within CSW01_00430at 78.820 kb on + strand, within CSW01_00430at 78.820 kb on + strand, within CSW01_00430at 78.820 kb on + strand, within CSW01_00430at 78.825 kb on + strand, within CSW01_00430at 78.828 kb on - strand, within CSW01_00430at 78.828 kb on - strand, within CSW01_00430at 78.830 kb on + strand, within CSW01_00430at 78.830 kb on + strand, within CSW01_00430at 78.840 kb on + strand, within CSW01_00430at 78.860 kb on + strand, within CSW01_00430at 78.860 kb on + strand, within CSW01_00430at 78.868 kb on - strand, within CSW01_00430at 78.878 kb on + strand, within CSW01_00430at 78.878 kb on + strand, within CSW01_00430at 78.878 kb on + strand, within CSW01_00430at 78.878 kb on + strand, within CSW01_00430at 78.886 kb on - strand, within CSW01_00430at 78.936 kb on + strand, within CSW01_00430at 78.936 kb on + strand, within CSW01_00430at 78.952 kb on + strandat 78.952 kb on + strandat 78.960 kb on - strandat 78.960 kb on - strandat 78.960 kb on - strandat 78.986 kb on - strandat 79.000 kb on + strandat 79.001 kb on + strandat 79.059 kb on - strandat 79.059 kb on - strandat 79.077 kb on + strandat 79.104 kb on - strandat 79.130 kb on + strandat 79.130 kb on + strandat 79.130 kb on + strandat 79.130 kb on + strandat 79.130 kb on + strandat 79.130 kb on + strandat 79.130 kb on + strandat 79.130 kb on + strandat 79.130 kb on + strandat 79.130 kb on + strandat 79.130 kb on + strandat 79.138 kb on - strandat 79.138 kb on - strandat 79.138 kb on - strandat 79.138 kb on - strandat 79.138 kb on - strandat 79.138 kb on - strandat 79.163 kb on - strand, within CSW01_00435at 79.185 kb on - strand, within CSW01_00435at 79.239 kb on + strand, within CSW01_00435at 79.242 kb on - strand, within CSW01_00435at 79.266 kb on - strand, within CSW01_00435at 79.331 kb on - strand, within CSW01_00435at 79.360 kb on + strand, within CSW01_00435at 79.368 kb on - strand, within CSW01_00435at 79.374 kb on - strand, within CSW01_00435at 79.410 kb on + strand, within CSW01_00435at 79.427 kb on - strand, within CSW01_00435at 79.437 kb on - strand, within CSW01_00435at 79.462 kb on + strand, within CSW01_00435at 79.467 kb on + strand, within CSW01_00435at 79.474 kb on + strand, within CSW01_00435at 79.475 kb on - strand, within CSW01_00435at 79.475 kb on - strand, within CSW01_00435at 79.475 kb on - strand, within CSW01_00435at 79.482 kb on - strand, within CSW01_00435at 79.482 kb on - strand, within CSW01_00435at 79.484 kb on + strand, within CSW01_00435at 79.490 kb on + strand, within CSW01_00435at 79.490 kb on + strand, within CSW01_00435at 79.492 kb on - strand, within CSW01_00435at 79.498 kb on - strand, within CSW01_00435at 79.498 kb on - strand, within CSW01_00435at 79.515 kb on - strand, within CSW01_00435at 79.609 kb on - strand, within CSW01_00435at 79.632 kb on + strand, within CSW01_00435at 79.633 kb on - strand, within CSW01_00435at 79.639 kb on + strand, within CSW01_00435at 79.696 kb on + strand, within CSW01_00435at 79.712 kb on + strand, within CSW01_00435at 79.720 kb on - strand, within CSW01_00435at 79.786 kb on + strand, within CSW01_00435at 79.786 kb on + strand, within CSW01_00435at 79.787 kb on + strand, within CSW01_00435at 79.787 kb on + strand, within CSW01_00435at 79.787 kb on + strand, within CSW01_00435at 79.787 kb on + strand, within CSW01_00435at 79.787 kb on + strand, within CSW01_00435at 79.787 kb on + strand, within CSW01_00435at 79.787 kb on + strand, within CSW01_00435at 79.787 kb on + strand, within CSW01_00435at 79.787 kb on + strand, within CSW01_00435at 79.787 kb on + strand, within CSW01_00435at 79.787 kb on + strand, within CSW01_00435at 79.787 kb on + strand, within CSW01_00435at 79.787 kb on + strand, within CSW01_00435at 79.792 kb on + strand, within CSW01_00435at 79.795 kb on - strand, within CSW01_00435at 79.795 kb on - strand, within CSW01_00435at 79.800 kb on - strand, within CSW01_00435at 79.800 kb on - strand, within CSW01_00435at 79.832 kb on - strand, within CSW01_00435at 79.868 kb on + strand, within CSW01_00435at 79.876 kb on - strandat 79.876 kb on - strandat 79.876 kb on - strandat 79.876 kb on - strandat 79.912 kb on + strandat 79.912 kb on + strandat 79.912 kb on + strandat 79.912 kb on + strandat 79.912 kb on + strandat 79.912 kb on + strandat 79.914 kb on - strandat 79.917 kb on + strandat 79.925 kb on - strandat 79.934 kb on + strandat 79.974 kb on + strandat 79.974 kb on + strandat 79.996 kb on + strandat 79.996 kb on + strandat 79.996 kb on + strandat 79.996 kb on + strandat 80.003 kb on - strandat 80.004 kb on - strandat 80.004 kb on - strandat 80.004 kb on - strandat 80.037 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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76,897 + CSW01_00420 0.18 -0.3
76,923 - CSW01_00420 0.23 -0.2
76,931 - CSW01_00420 0.25 -0.0
76,976 - CSW01_00420 0.33 +0.0
77,006 + CSW01_00420 0.39 +0.2
77,049 + CSW01_00420 0.47 +0.4
77,129 + CSW01_00420 0.62 +0.8
77,130 - CSW01_00420 0.62 -0.5
77,137 - CSW01_00420 0.64 -0.3
77,146 + CSW01_00420 0.65 -0.6
77,171 + CSW01_00420 0.70 +0.6
77,179 - CSW01_00420 0.72 +0.7
77,179 - CSW01_00420 0.72 +0.1
77,179 - CSW01_00420 0.72 +0.0
77,181 + CSW01_00420 0.72 +0.2
77,181 + CSW01_00420 0.72 +0.6
77,189 - CSW01_00420 0.73 +0.1
77,219 + CSW01_00420 0.79 -0.0
77,219 + CSW01_00420 0.79 +0.2
77,219 + CSW01_00420 0.79 -0.8
77,219 + CSW01_00420 0.79 -0.6
77,219 + CSW01_00420 0.79 +0.2
77,219 + CSW01_00420 0.79 -0.1
77,219 + CSW01_00420 0.79 +0.3
77,219 + CSW01_00420 0.79 -0.5
77,219 + CSW01_00420 0.79 -0.6
77,227 - CSW01_00420 0.81 +0.1
77,227 - CSW01_00420 0.81 -0.1
77,227 - CSW01_00420 0.81 -0.3
77,387 - -1.7
77,395 - -0.2
77,429 - -0.1
77,474 - CSW01_00425 0.22 -0.8
77,515 - CSW01_00425 0.34 +0.3
77,546 + CSW01_00425 0.44 +0.2
77,565 - CSW01_00425 0.50 -0.6
77,565 - CSW01_00425 0.50 +0.6
77,606 + CSW01_00425 0.62 -0.1
77,614 - CSW01_00425 0.65 +0.0
77,657 + CSW01_00425 0.78 +0.2
77,657 - CSW01_00425 0.78 +0.0
77,695 + -0.6
77,697 - -0.1
77,703 - +0.2
77,703 - +0.5
77,781 - -0.0
77,816 + +0.1
77,823 + +1.2
77,824 - -0.3
77,824 - +0.2
77,866 + -0.4
77,879 - -0.2
77,914 + -0.0
77,914 + -0.3
77,914 + -1.7
77,927 - +0.4
77,932 - -0.5
77,932 - +0.6
77,954 + -0.2
78,067 + CSW01_00430 0.17 +0.3
78,145 + CSW01_00430 0.24 +0.3
78,146 + CSW01_00430 0.24 -0.6
78,146 + CSW01_00430 0.24 -0.8
78,146 + CSW01_00430 0.24 +0.7
78,146 + CSW01_00430 0.24 -0.2
78,146 + CSW01_00430 0.24 +0.3
78,154 - CSW01_00430 0.25 +0.4
78,154 - CSW01_00430 0.25 +0.1
78,154 - CSW01_00430 0.25 +0.5
78,154 - CSW01_00430 0.25 +0.1
78,182 - CSW01_00430 0.27 -0.4
78,182 - CSW01_00430 0.27 +0.1
78,208 + CSW01_00430 0.29 -0.3
78,221 + CSW01_00430 0.30 +1.1
78,228 - CSW01_00430 0.31 -0.8
78,231 + CSW01_00430 0.31 +0.6
78,232 - CSW01_00430 0.31 -0.2
78,259 - CSW01_00430 0.33 -1.0
78,269 + CSW01_00430 0.34 +0.1
78,273 + CSW01_00430 0.35 -0.3
78,277 - CSW01_00430 0.35 -0.6
78,279 - CSW01_00430 0.35 -0.8
78,281 - CSW01_00430 0.35 +0.6
78,290 + CSW01_00430 0.36 +0.1
78,290 + CSW01_00430 0.36 -1.3
78,290 + CSW01_00430 0.36 +0.1
78,298 - CSW01_00430 0.37 -1.0
78,298 - CSW01_00430 0.37 -0.2
78,298 - CSW01_00430 0.37 +0.5
78,339 + CSW01_00430 0.40 +0.4
78,418 + CSW01_00430 0.47 +1.2
78,439 + CSW01_00430 0.48 -0.4
78,439 + CSW01_00430 0.48 -0.1
78,439 + CSW01_00430 0.48 +0.0
78,447 - CSW01_00430 0.49 -0.3
78,470 + CSW01_00430 0.51 +1.6
78,489 + CSW01_00430 0.53 +0.4
78,539 + CSW01_00430 0.57 -0.5
78,550 + CSW01_00430 0.58 +0.9
78,664 + CSW01_00430 0.67 -0.3
78,800 + CSW01_00430 0.79 +0.0
78,800 + CSW01_00430 0.79 +1.1
78,800 + CSW01_00430 0.79 -0.3
78,820 + CSW01_00430 0.80 -0.4
78,820 + CSW01_00430 0.80 +0.2
78,820 + CSW01_00430 0.80 -0.1
78,825 + CSW01_00430 0.81 +0.2
78,828 - CSW01_00430 0.81 -0.9
78,828 - CSW01_00430 0.81 -0.2
78,830 + CSW01_00430 0.81 -0.5
78,830 + CSW01_00430 0.81 +0.4
78,840 + CSW01_00430 0.82 +0.1
78,860 + CSW01_00430 0.84 -0.1
78,860 + CSW01_00430 0.84 +0.0
78,868 - CSW01_00430 0.84 -0.2
78,878 + CSW01_00430 0.85 +0.4
78,878 + CSW01_00430 0.85 -0.6
78,878 + CSW01_00430 0.85 -0.0
78,878 + CSW01_00430 0.85 +0.7
78,886 - CSW01_00430 0.86 -0.5
78,936 + CSW01_00430 0.90 -0.2
78,936 + CSW01_00430 0.90 -0.2
78,952 + -0.3
78,952 + +0.3
78,960 - -0.3
78,960 - -0.6
78,960 - +0.1
78,986 - +0.2
79,000 + -0.3
79,001 + -0.4
79,059 - +0.2
79,059 - -0.1
79,077 + +0.2
79,104 - -0.5
79,130 + +1.0
79,130 + -0.5
79,130 + -0.8
79,130 + -0.0
79,130 + +0.2
79,130 + +0.1
79,130 + -0.8
79,130 + +0.2
79,130 + +0.5
79,130 + -0.6
79,130 + -1.1
79,138 - -0.2
79,138 - -0.2
79,138 - +0.2
79,138 - -0.4
79,138 - -0.5
79,138 - -0.2
79,163 - CSW01_00435 0.12 -0.6
79,185 - CSW01_00435 0.14 +0.6
79,239 + CSW01_00435 0.20 -0.1
79,242 - CSW01_00435 0.21 -1.0
79,266 - CSW01_00435 0.23 +0.2
79,331 - CSW01_00435 0.30 +0.0
79,360 + CSW01_00435 0.34 +0.6
79,368 - CSW01_00435 0.35 -0.7
79,374 - CSW01_00435 0.35 +0.2
79,410 + CSW01_00435 0.39 +0.3
79,427 - CSW01_00435 0.41 -0.1
79,437 - CSW01_00435 0.42 +0.5
79,462 + CSW01_00435 0.45 -0.6
79,467 + CSW01_00435 0.45 -0.5
79,474 + CSW01_00435 0.46 -0.1
79,475 - CSW01_00435 0.46 -0.5
79,475 - CSW01_00435 0.46 +0.2
79,475 - CSW01_00435 0.46 +0.0
79,482 - CSW01_00435 0.47 -0.9
79,482 - CSW01_00435 0.47 +0.4
79,484 + CSW01_00435 0.47 +0.4
79,490 + CSW01_00435 0.48 +0.1
79,490 + CSW01_00435 0.48 -0.1
79,492 - CSW01_00435 0.48 +0.1
79,498 - CSW01_00435 0.49 +0.3
79,498 - CSW01_00435 0.49 +0.4
79,515 - CSW01_00435 0.51 +0.1
79,609 - CSW01_00435 0.61 +0.2
79,632 + CSW01_00435 0.63 +0.1
79,633 - CSW01_00435 0.64 -0.6
79,639 + CSW01_00435 0.64 +0.1
79,696 + CSW01_00435 0.71 -1.2
79,712 + CSW01_00435 0.72 -0.4
79,720 - CSW01_00435 0.73 -0.2
79,786 + CSW01_00435 0.80 +0.1
79,786 + CSW01_00435 0.80 -0.3
79,787 + CSW01_00435 0.80 -1.7
79,787 + CSW01_00435 0.80 +0.2
79,787 + CSW01_00435 0.80 +0.1
79,787 + CSW01_00435 0.80 -0.1
79,787 + CSW01_00435 0.80 -0.1
79,787 + CSW01_00435 0.80 -1.8
79,787 + CSW01_00435 0.80 -0.5
79,787 + CSW01_00435 0.80 +0.4
79,787 + CSW01_00435 0.80 -0.8
79,787 + CSW01_00435 0.80 -0.5
79,787 + CSW01_00435 0.80 +0.4
79,787 + CSW01_00435 0.80 +0.6
79,787 + CSW01_00435 0.80 +0.3
79,792 + CSW01_00435 0.81 +0.2
79,795 - CSW01_00435 0.81 -0.0
79,795 - CSW01_00435 0.81 -0.1
79,800 - CSW01_00435 0.82 -0.4
79,800 - CSW01_00435 0.82 -1.8
79,832 - CSW01_00435 0.85 -0.2
79,868 + CSW01_00435 0.89 -1.2
79,876 - -0.6
79,876 - -0.7
79,876 - +0.7
79,876 - -0.1
79,912 + -0.3
79,912 + -0.0
79,912 + +0.3
79,912 + -0.2
79,912 + -0.3
79,912 + -1.0
79,914 - -0.3
79,917 + -0.9
79,925 - -0.5
79,934 + -1.3
79,974 + +0.1
79,974 + -0.2
79,996 + +0.1
79,996 + +0.5
79,996 + +0.0
79,996 + +0.4
80,003 - -1.0
80,004 - -0.8
80,004 - +0.8
80,004 - -0.6
80,037 - -0.2

Or see this region's nucleotide sequence