Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4264

Experiment: L-Histidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4263 and Ac3H11_4264 are separated by 149 nucleotidesAc3H11_4264 and Ac3H11_4265 are separated by 107 nucleotidesAc3H11_4265 and Ac3H11_4266 are separated by 111 nucleotides Ac3H11_4263 - Inner membrane protein translocase component YidC, long form, at 36,998 to 38,710 _4263 Ac3H11_4264 - GTPase and tRNA-U34 5-formylation enzyme TrmE, at 38,860 to 40,299 _4264 Ac3H11_4265 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 40,407 to 40,898 _4265 Ac3H11_4266 - FIG00931734: hypothetical protein, at 41,010 to 41,960 _4266 Position (kb) 38 39 40 41Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 38.704 kb on + strandat 38.704 kb on + strandat 38.704 kb on + strandat 38.704 kb on + strandat 38.704 kb on + strandat 38.704 kb on + strandat 38.704 kb on + strandat 38.705 kb on - strandat 38.847 kb on + strandat 38.847 kb on + strandat 38.847 kb on + strandat 38.848 kb on - strandat 38.848 kb on - strandat 38.898 kb on + strandat 39.007 kb on + strand, within Ac3H11_4264at 39.007 kb on + strand, within Ac3H11_4264at 39.008 kb on - strand, within Ac3H11_4264at 39.008 kb on - strand, within Ac3H11_4264at 39.008 kb on - strand, within Ac3H11_4264at 39.018 kb on + strand, within Ac3H11_4264at 39.061 kb on + strand, within Ac3H11_4264at 39.061 kb on + strand, within Ac3H11_4264at 39.061 kb on + strand, within Ac3H11_4264at 39.062 kb on - strand, within Ac3H11_4264at 39.083 kb on - strand, within Ac3H11_4264at 39.083 kb on - strand, within Ac3H11_4264at 39.083 kb on - strand, within Ac3H11_4264at 39.841 kb on + strand, within Ac3H11_4264at 39.841 kb on + strand, within Ac3H11_4264at 39.841 kb on + strand, within Ac3H11_4264at 39.842 kb on - strand, within Ac3H11_4264at 39.845 kb on + strand, within Ac3H11_4264at 40.087 kb on + strand, within Ac3H11_4264at 40.087 kb on + strand, within Ac3H11_4264at 40.087 kb on + strand, within Ac3H11_4264at 40.087 kb on + strand, within Ac3H11_4264at 40.088 kb on - strand, within Ac3H11_4264at 40.088 kb on - strand, within Ac3H11_4264at 40.088 kb on - strand, within Ac3H11_4264at 40.297 kb on + strandat 40.297 kb on + strandat 40.297 kb on + strandat 40.297 kb on + strandat 40.298 kb on - strandat 40.298 kb on - strandat 40.298 kb on - strandat 40.298 kb on - strandat 40.342 kb on + strandat 40.343 kb on - strandat 40.343 kb on - strandat 40.343 kb on - strandat 40.343 kb on - strandat 40.343 kb on - strandat 40.349 kb on + strandat 40.349 kb on + strandat 40.350 kb on - strandat 40.359 kb on + strandat 40.360 kb on - strandat 40.384 kb on - strandat 40.384 kb on - strandat 40.392 kb on + strandat 40.392 kb on + strandat 40.393 kb on - strandat 40.536 kb on + strand, within Ac3H11_4265at 40.536 kb on + strand, within Ac3H11_4265at 40.536 kb on + strand, within Ac3H11_4265at 40.537 kb on - strand, within Ac3H11_4265at 40.537 kb on - strand, within Ac3H11_4265at 40.537 kb on - strand, within Ac3H11_4265at 40.606 kb on - strand, within Ac3H11_4265at 40.606 kb on - strand, within Ac3H11_4265at 40.606 kb on - strand, within Ac3H11_4265at 40.606 kb on - strand, within Ac3H11_4265at 40.606 kb on - strand, within Ac3H11_4265at 40.638 kb on + strand, within Ac3H11_4265at 40.638 kb on + strand, within Ac3H11_4265at 40.638 kb on + strand, within Ac3H11_4265at 40.638 kb on + strand, within Ac3H11_4265at 40.639 kb on - strand, within Ac3H11_4265at 40.639 kb on - strand, within Ac3H11_4265at 40.639 kb on - strand, within Ac3H11_4265at 40.639 kb on - strand, within Ac3H11_4265at 40.639 kb on - strand, within Ac3H11_4265at 40.952 kb on + strandat 40.953 kb on - strandat 40.962 kb on + strandat 40.962 kb on + strandat 40.962 kb on + strandat 40.963 kb on - strandat 40.963 kb on - strandat 40.963 kb on - strandat 41.208 kb on + strand, within Ac3H11_4266at 41.208 kb on + strand, within Ac3H11_4266at 41.208 kb on + strand, within Ac3H11_4266at 41.208 kb on + strand, within Ac3H11_4266at 41.208 kb on + strand, within Ac3H11_4266at 41.208 kb on + strand, within Ac3H11_4266at 41.209 kb on - strand, within Ac3H11_4266at 41.209 kb on - strand, within Ac3H11_4266at 41.209 kb on - strand, within Ac3H11_4266at 41.209 kb on - strand, within Ac3H11_4266at 41.209 kb on - strand, within Ac3H11_4266at 41.209 kb on - strand, within Ac3H11_4266at 41.259 kb on + strand, within Ac3H11_4266at 41.259 kb on + strand, within Ac3H11_4266at 41.259 kb on + strand, within Ac3H11_4266at 41.259 kb on + strand, within Ac3H11_4266at 41.259 kb on + strand, within Ac3H11_4266at 41.260 kb on - strand, within Ac3H11_4266at 41.260 kb on - strand, within Ac3H11_4266at 41.260 kb on - strand, within Ac3H11_4266

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (N)
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38,704 + +0.2
38,704 + +0.2
38,704 + -1.5
38,704 + +0.2
38,704 + -1.2
38,704 + +0.1
38,704 + -0.5
38,705 - -2.5
38,847 + -0.3
38,847 + +0.1
38,847 + -0.7
38,848 - -1.3
38,848 - +0.8
38,898 + +0.9
39,007 + Ac3H11_4264 0.10 -1.3
39,007 + Ac3H11_4264 0.10 -2.8
39,008 - Ac3H11_4264 0.10 -1.5
39,008 - Ac3H11_4264 0.10 -2.6
39,008 - Ac3H11_4264 0.10 -0.6
39,018 + Ac3H11_4264 0.11 -1.1
39,061 + Ac3H11_4264 0.14 +0.3
39,061 + Ac3H11_4264 0.14 -1.3
39,061 + Ac3H11_4264 0.14 -2.3
39,062 - Ac3H11_4264 0.14 -1.1
39,083 - Ac3H11_4264 0.15 +0.7
39,083 - Ac3H11_4264 0.15 +0.4
39,083 - Ac3H11_4264 0.15 -1.2
39,841 + Ac3H11_4264 0.68 -2.2
39,841 + Ac3H11_4264 0.68 -0.5
39,841 + Ac3H11_4264 0.68 +0.7
39,842 - Ac3H11_4264 0.68 -2.0
39,845 + Ac3H11_4264 0.68 +1.3
40,087 + Ac3H11_4264 0.85 +0.1
40,087 + Ac3H11_4264 0.85 -0.5
40,087 + Ac3H11_4264 0.85 -0.9
40,087 + Ac3H11_4264 0.85 -0.9
40,088 - Ac3H11_4264 0.85 -1.1
40,088 - Ac3H11_4264 0.85 -0.4
40,088 - Ac3H11_4264 0.85 -0.1
40,297 + +1.3
40,297 + -0.1
40,297 + +0.1
40,297 + -0.2
40,298 - +0.1
40,298 - +0.0
40,298 - +1.5
40,298 - -0.8
40,342 + -1.7
40,343 - +0.4
40,343 - -0.0
40,343 - +0.9
40,343 - -0.7
40,343 - +0.1
40,349 + -0.4
40,349 + -1.2
40,350 - -1.1
40,359 + +0.5
40,360 - +0.4
40,384 - -0.4
40,384 - +0.1
40,392 + -0.3
40,392 + -1.0
40,393 - -1.0
40,536 + Ac3H11_4265 0.26 -0.5
40,536 + Ac3H11_4265 0.26 -0.1
40,536 + Ac3H11_4265 0.26 +0.8
40,537 - Ac3H11_4265 0.26 +1.8
40,537 - Ac3H11_4265 0.26 +0.4
40,537 - Ac3H11_4265 0.26 +0.3
40,606 - Ac3H11_4265 0.40 -0.6
40,606 - Ac3H11_4265 0.40 +0.5
40,606 - Ac3H11_4265 0.40 +0.5
40,606 - Ac3H11_4265 0.40 -0.2
40,606 - Ac3H11_4265 0.40 -1.4
40,638 + Ac3H11_4265 0.47 -0.5
40,638 + Ac3H11_4265 0.47 +1.0
40,638 + Ac3H11_4265 0.47 +0.3
40,638 + Ac3H11_4265 0.47 +0.6
40,639 - Ac3H11_4265 0.47 -1.7
40,639 - Ac3H11_4265 0.47 +0.1
40,639 - Ac3H11_4265 0.47 -0.4
40,639 - Ac3H11_4265 0.47 +1.1
40,639 - Ac3H11_4265 0.47 +0.7
40,952 + -1.8
40,953 - +0.4
40,962 + -0.8
40,962 + -0.1
40,962 + +1.2
40,963 - +0.8
40,963 - +1.1
40,963 - +1.1
41,208 + Ac3H11_4266 0.21 -1.4
41,208 + Ac3H11_4266 0.21 -1.1
41,208 + Ac3H11_4266 0.21 +1.0
41,208 + Ac3H11_4266 0.21 -1.9
41,208 + Ac3H11_4266 0.21 +0.7
41,208 + Ac3H11_4266 0.21 -0.4
41,209 - Ac3H11_4266 0.21 +0.2
41,209 - Ac3H11_4266 0.21 -1.3
41,209 - Ac3H11_4266 0.21 -0.6
41,209 - Ac3H11_4266 0.21 +0.2
41,209 - Ac3H11_4266 0.21 -0.3
41,209 - Ac3H11_4266 0.21 -0.1
41,259 + Ac3H11_4266 0.26 +0.7
41,259 + Ac3H11_4266 0.26 +0.5
41,259 + Ac3H11_4266 0.26 +0.6
41,259 + Ac3H11_4266 0.26 -0.5
41,259 + Ac3H11_4266 0.26 -0.5
41,260 - Ac3H11_4266 0.26 +0.5
41,260 - Ac3H11_4266 0.26 -0.8
41,260 - Ac3H11_4266 0.26 -0.5

Or see this region's nucleotide sequence