Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4056

Experiment: L-Histidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4054 and Ac3H11_4055 are separated by 4 nucleotidesAc3H11_4055 and Ac3H11_4056 are separated by 58 nucleotidesAc3H11_4056 and Ac3H11_4057 are separated by 83 nucleotidesAc3H11_4057 and Ac3H11_4058 are separated by 403 nucleotides Ac3H11_4054 - General secretion pathway protein F / Type II secretory pathway, component PulF, at 298,469 to 299,737 _4054 Ac3H11_4055 - 5'-nucleotidase (EC 3.1.3.5), at 299,742 to 300,677 _4055 Ac3H11_4056 - Probable calcium-binding signal peptide protein, at 300,736 to 301,095 _4056 Ac3H11_4057 - FIG00581394: hypothetical protein, at 301,179 to 301,556 _4057 Ac3H11_4058 - required for efflux of an amino acid polymer (from data), at 301,960 to 302,469 _4058 Position (kb) 300 301 302Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 299.741 kb on + strandat 299.741 kb on + strandat 299.742 kb on - strandat 299.742 kb on - strandat 299.847 kb on + strand, within Ac3H11_4055at 299.848 kb on - strand, within Ac3H11_4055at 299.848 kb on - strand, within Ac3H11_4055at 299.848 kb on - strand, within Ac3H11_4055at 300.270 kb on + strand, within Ac3H11_4055at 300.271 kb on - strand, within Ac3H11_4055at 300.473 kb on + strand, within Ac3H11_4055at 300.473 kb on + strand, within Ac3H11_4055at 300.473 kb on + strand, within Ac3H11_4055at 300.474 kb on - strand, within Ac3H11_4055at 300.638 kb on + strandat 300.985 kb on + strand, within Ac3H11_4056at 300.985 kb on + strand, within Ac3H11_4056at 300.985 kb on + strand, within Ac3H11_4056at 300.985 kb on + strand, within Ac3H11_4056at 300.985 kb on + strand, within Ac3H11_4056at 300.985 kb on + strand, within Ac3H11_4056at 300.985 kb on + strand, within Ac3H11_4056at 300.986 kb on - strand, within Ac3H11_4056at 300.986 kb on - strand, within Ac3H11_4056at 300.986 kb on - strand, within Ac3H11_4056at 300.986 kb on - strand, within Ac3H11_4056at 300.986 kb on - strand, within Ac3H11_4056at 300.986 kb on - strand, within Ac3H11_4056at 300.995 kb on - strand, within Ac3H11_4056at 301.024 kb on + strand, within Ac3H11_4056at 301.112 kb on + strandat 301.217 kb on - strand, within Ac3H11_4057at 301.217 kb on - strand, within Ac3H11_4057at 301.220 kb on + strand, within Ac3H11_4057at 301.220 kb on + strand, within Ac3H11_4057at 301.220 kb on + strand, within Ac3H11_4057at 301.220 kb on + strand, within Ac3H11_4057at 301.220 kb on + strand, within Ac3H11_4057at 301.220 kb on + strand, within Ac3H11_4057at 301.220 kb on + strand, within Ac3H11_4057at 301.220 kb on + strand, within Ac3H11_4057at 301.220 kb on + strand, within Ac3H11_4057at 301.220 kb on + strand, within Ac3H11_4057at 301.220 kb on + strand, within Ac3H11_4057at 301.220 kb on + strand, within Ac3H11_4057at 301.220 kb on + strand, within Ac3H11_4057at 301.220 kb on + strand, within Ac3H11_4057at 301.220 kb on + strand, within Ac3H11_4057at 301.220 kb on + strand, within Ac3H11_4057at 301.220 kb on + strand, within Ac3H11_4057at 301.220 kb on + strand, within Ac3H11_4057at 301.220 kb on + strand, within Ac3H11_4057at 301.220 kb on + strand, within Ac3H11_4057at 301.221 kb on - strand, within Ac3H11_4057at 301.221 kb on - strand, within Ac3H11_4057at 301.221 kb on - strand, within Ac3H11_4057at 301.221 kb on - strand, within Ac3H11_4057at 301.221 kb on - strand, within Ac3H11_4057at 301.221 kb on - strand, within Ac3H11_4057at 301.221 kb on - strand, within Ac3H11_4057at 301.221 kb on - strand, within Ac3H11_4057at 301.221 kb on - strand, within Ac3H11_4057at 301.221 kb on - strand, within Ac3H11_4057at 301.221 kb on - strand, within Ac3H11_4057at 301.221 kb on - strand, within Ac3H11_4057at 301.221 kb on - strand, within Ac3H11_4057at 301.221 kb on - strand, within Ac3H11_4057at 301.221 kb on - strand, within Ac3H11_4057at 301.221 kb on - strand, within Ac3H11_4057at 301.348 kb on + strand, within Ac3H11_4057at 301.348 kb on + strand, within Ac3H11_4057at 301.348 kb on + strand, within Ac3H11_4057at 301.348 kb on + strandat 301.349 kb on - strand, within Ac3H11_4057at 301.349 kb on - strand, within Ac3H11_4057at 301.349 kb on - strand, within Ac3H11_4057at 301.349 kb on - strand, within Ac3H11_4057at 301.349 kb on - strand, within Ac3H11_4057at 301.349 kb on - strand, within Ac3H11_4057at 301.349 kb on - strand, within Ac3H11_4057at 301.349 kb on - strand, within Ac3H11_4057at 301.349 kb on - strand, within Ac3H11_4057at 301.349 kb on - strand, within Ac3H11_4057at 301.349 kb on - strand, within Ac3H11_4057at 301.349 kb on - strand, within Ac3H11_4057at 301.349 kb on - strand, within Ac3H11_4057at 301.383 kb on + strand, within Ac3H11_4057at 301.383 kb on + strand, within Ac3H11_4057at 301.383 kb on + strand, within Ac3H11_4057at 301.383 kb on + strand, within Ac3H11_4057at 301.383 kb on + strand, within Ac3H11_4057at 301.384 kb on - strand, within Ac3H11_4057at 301.552 kb on + strandat 301.552 kb on + strandat 301.552 kb on + strandat 301.553 kb on - strandat 301.674 kb on + strandat 301.674 kb on + strandat 301.674 kb on + strandat 301.674 kb on + strandat 301.675 kb on - strandat 301.706 kb on - strandat 301.706 kb on - strandat 301.743 kb on + strandat 301.744 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (N)
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299,741 + +0.7
299,741 + -2.1
299,742 - -0.5
299,742 - -1.1
299,847 + Ac3H11_4055 0.11 -0.5
299,848 - Ac3H11_4055 0.11 +0.5
299,848 - Ac3H11_4055 0.11 +0.7
299,848 - Ac3H11_4055 0.11 -0.4
300,270 + Ac3H11_4055 0.56 +0.1
300,271 - Ac3H11_4055 0.57 -0.6
300,473 + Ac3H11_4055 0.78 -0.1
300,473 + Ac3H11_4055 0.78 -1.2
300,473 + Ac3H11_4055 0.78 -0.6
300,474 - Ac3H11_4055 0.78 -0.1
300,638 + -0.5
300,985 + Ac3H11_4056 0.69 -1.6
300,985 + Ac3H11_4056 0.69 -0.4
300,985 + Ac3H11_4056 0.69 -1.2
300,985 + Ac3H11_4056 0.69 -1.5
300,985 + Ac3H11_4056 0.69 -0.5
300,985 + Ac3H11_4056 0.69 -0.2
300,985 + Ac3H11_4056 0.69 +0.1
300,986 - Ac3H11_4056 0.69 -0.9
300,986 - Ac3H11_4056 0.69 -0.4
300,986 - Ac3H11_4056 0.69 +0.9
300,986 - Ac3H11_4056 0.69 -0.0
300,986 - Ac3H11_4056 0.69 +0.1
300,986 - Ac3H11_4056 0.69 +0.2
300,995 - Ac3H11_4056 0.72 +1.3
301,024 + Ac3H11_4056 0.80 +0.7
301,112 + -0.0
301,217 - Ac3H11_4057 0.10 +0.5
301,217 - Ac3H11_4057 0.10 -1.6
301,220 + Ac3H11_4057 0.11 +0.7
301,220 + Ac3H11_4057 0.11 -1.6
301,220 + Ac3H11_4057 0.11 -0.8
301,220 + Ac3H11_4057 0.11 -0.1
301,220 + Ac3H11_4057 0.11 -1.3
301,220 + Ac3H11_4057 0.11 -1.5
301,220 + Ac3H11_4057 0.11 -3.0
301,220 + Ac3H11_4057 0.11 -1.3
301,220 + Ac3H11_4057 0.11 +0.5
301,220 + Ac3H11_4057 0.11 -0.5
301,220 + Ac3H11_4057 0.11 -0.6
301,220 + Ac3H11_4057 0.11 +0.7
301,220 + Ac3H11_4057 0.11 -0.2
301,220 + Ac3H11_4057 0.11 +1.0
301,220 + Ac3H11_4057 0.11 -1.0
301,220 + Ac3H11_4057 0.11 -0.4
301,220 + Ac3H11_4057 0.11 -1.8
301,220 + Ac3H11_4057 0.11 -0.5
301,220 + Ac3H11_4057 0.11 +0.7
301,220 + Ac3H11_4057 0.11 -0.7
301,221 - Ac3H11_4057 0.11 +1.6
301,221 - Ac3H11_4057 0.11 +0.3
301,221 - Ac3H11_4057 0.11 +0.2
301,221 - Ac3H11_4057 0.11 -0.6
301,221 - Ac3H11_4057 0.11 +0.9
301,221 - Ac3H11_4057 0.11 -0.4
301,221 - Ac3H11_4057 0.11 -1.1
301,221 - Ac3H11_4057 0.11 +1.2
301,221 - Ac3H11_4057 0.11 -1.5
301,221 - Ac3H11_4057 0.11 +0.8
301,221 - Ac3H11_4057 0.11 +0.2
301,221 - Ac3H11_4057 0.11 -1.8
301,221 - Ac3H11_4057 0.11 -1.2
301,221 - Ac3H11_4057 0.11 -0.5
301,221 - Ac3H11_4057 0.11 +0.6
301,221 - Ac3H11_4057 0.11 -0.4
301,348 + Ac3H11_4057 0.45 -0.0
301,348 + Ac3H11_4057 0.45 -0.4
301,348 + Ac3H11_4057 0.45 -1.4
301,348 + +3.0
301,349 - Ac3H11_4057 0.45 -0.2
301,349 - Ac3H11_4057 0.45 -0.4
301,349 - Ac3H11_4057 0.45 -0.7
301,349 - Ac3H11_4057 0.45 +0.9
301,349 - Ac3H11_4057 0.45 -0.1
301,349 - Ac3H11_4057 0.45 -0.2
301,349 - Ac3H11_4057 0.45 -0.7
301,349 - Ac3H11_4057 0.45 -1.6
301,349 - Ac3H11_4057 0.45 -1.1
301,349 - Ac3H11_4057 0.45 +0.3
301,349 - Ac3H11_4057 0.45 -0.8
301,349 - Ac3H11_4057 0.45 -0.5
301,349 - Ac3H11_4057 0.45 +0.5
301,383 + Ac3H11_4057 0.54 -1.0
301,383 + Ac3H11_4057 0.54 -0.2
301,383 + Ac3H11_4057 0.54 -0.8
301,383 + Ac3H11_4057 0.54 -1.0
301,383 + Ac3H11_4057 0.54 -1.0
301,384 - Ac3H11_4057 0.54 +0.5
301,552 + -1.2
301,552 + -0.5
301,552 + -1.5
301,553 - +0.8
301,674 + -0.6
301,674 + +0.2
301,674 + +0.2
301,674 + -0.2
301,675 - -0.6
301,706 - -1.1
301,706 - +0.5
301,743 + +0.8
301,744 - -0.4

Or see this region's nucleotide sequence