Experiment: L-Histidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2551 and Ac3H11_2552 are separated by 21 nucleotides Ac3H11_2552 and Ac3H11_2553 are separated by 61 nucleotides Ac3H11_2553 and Ac3H11_2554 overlap by 4 nucleotides Ac3H11_2554 and Ac3H11_2555 are separated by 34 nucleotides
Ac3H11_2551 - Conserved hypothetical protein (perhaps related to histidine degradation), at 829,264 to 829,878
_2551
Ac3H11_2552 - Phytanoyl-CoA dioxygenase, at 829,900 to 830,793
_2552
Ac3H11_2553 - Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1), at 830,855 to 831,652
_2553
Ac3H11_2554 - ABC transporter for L-Histidine, permease component 1 <small>(from data)</small>, at 831,649 to 832,317
_2554
Ac3H11_2555 - ABC transporter for L-Histidine, periplasmic substrate-binding component 1 <small>(from data)</small>, at 832,352 to 833,101
_2555
Position (kb) 830
831
832 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 830.369 kb on + strand, within Ac3H11_2552 at 830.369 kb on + strand, within Ac3H11_2552 at 830.369 kb on + strand, within Ac3H11_2552 at 830.369 kb on + strand, within Ac3H11_2552 at 830.369 kb on + strand, within Ac3H11_2552 at 830.369 kb on + strand, within Ac3H11_2552 at 830.369 kb on + strand, within Ac3H11_2552 at 830.369 kb on + strand, within Ac3H11_2552 at 830.370 kb on - strand, within Ac3H11_2552 at 830.370 kb on - strand, within Ac3H11_2552 at 830.370 kb on - strand, within Ac3H11_2552 at 830.370 kb on - strand, within Ac3H11_2552 at 830.372 kb on + strand, within Ac3H11_2552 at 830.372 kb on + strand, within Ac3H11_2552 at 830.442 kb on - strand, within Ac3H11_2552 at 830.442 kb on - strand, within Ac3H11_2552 at 830.442 kb on - strand, within Ac3H11_2552 at 830.779 kb on + strand at 831.728 kb on + strand, within Ac3H11_2554 at 831.728 kb on + strand, within Ac3H11_2554 at 831.728 kb on + strand, within Ac3H11_2554 at 831.729 kb on - strand, within Ac3H11_2554 at 831.749 kb on + strand, within Ac3H11_2554 at 831.749 kb on + strand, within Ac3H11_2554 at 831.749 kb on + strand, within Ac3H11_2554 at 831.749 kb on + strand, within Ac3H11_2554 at 831.749 kb on + strand, within Ac3H11_2554 at 832.010 kb on + strand, within Ac3H11_2554 at 832.010 kb on + strand, within Ac3H11_2554 at 832.010 kb on + strand, within Ac3H11_2554 at 832.010 kb on + strand, within Ac3H11_2554 at 832.010 kb on + strand, within Ac3H11_2554 at 832.011 kb on - strand, within Ac3H11_2554 at 832.011 kb on - strand, within Ac3H11_2554 at 832.011 kb on - strand, within Ac3H11_2554 at 832.011 kb on - strand, within Ac3H11_2554 at 832.011 kb on - strand, within Ac3H11_2554 at 832.022 kb on + strand, within Ac3H11_2554 at 832.142 kb on + strand, within Ac3H11_2554 at 832.325 kb on + strand at 832.325 kb on + strand at 832.326 kb on - strand at 832.353 kb on + strand at 832.353 kb on + strand at 832.353 kb on + strand at 832.354 kb on - strand at 832.398 kb on + strand at 832.398 kb on + strand at 832.398 kb on + strand at 832.398 kb on + strand at 832.399 kb on - strand at 832.482 kb on + strand, within Ac3H11_2555 at 832.482 kb on + strand, within Ac3H11_2555 at 832.482 kb on + strand, within Ac3H11_2555 at 832.483 kb on - strand, within Ac3H11_2555 at 832.539 kb on + strand, within Ac3H11_2555 at 832.540 kb on - strand, within Ac3H11_2555 at 832.540 kb on - strand, within Ac3H11_2555 at 832.540 kb on - strand, within Ac3H11_2555
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (N) remove 830,369 + Ac3H11_2552 0.52 -4.1 830,369 + Ac3H11_2552 0.52 -3.4 830,369 + Ac3H11_2552 0.52 -3.0 830,369 + Ac3H11_2552 0.52 -2.2 830,369 + Ac3H11_2552 0.52 -3.6 830,369 + Ac3H11_2552 0.52 -3.4 830,369 + Ac3H11_2552 0.52 -2.2 830,369 + Ac3H11_2552 0.52 -2.6 830,370 - Ac3H11_2552 0.53 -4.2 830,370 - Ac3H11_2552 0.53 -1.0 830,370 - Ac3H11_2552 0.53 -1.8 830,370 - Ac3H11_2552 0.53 -2.6 830,372 + Ac3H11_2552 0.53 -3.6 830,372 + Ac3H11_2552 0.53 -2.3 830,442 - Ac3H11_2552 0.61 -1.1 830,442 - Ac3H11_2552 0.61 -2.4 830,442 - Ac3H11_2552 0.61 -3.4 830,779 + -3.4 831,728 + Ac3H11_2554 0.12 -0.6 831,728 + Ac3H11_2554 0.12 -1.8 831,728 + Ac3H11_2554 0.12 -3.5 831,729 - Ac3H11_2554 0.12 +0.3 831,749 + Ac3H11_2554 0.15 -4.5 831,749 + Ac3H11_2554 0.15 -3.8 831,749 + Ac3H11_2554 0.15 -4.0 831,749 + Ac3H11_2554 0.15 -2.1 831,749 + Ac3H11_2554 0.15 -3.4 832,010 + Ac3H11_2554 0.54 -4.0 832,010 + Ac3H11_2554 0.54 -4.4 832,010 + Ac3H11_2554 0.54 -3.2 832,010 + Ac3H11_2554 0.54 -2.6 832,010 + Ac3H11_2554 0.54 -3.7 832,011 - Ac3H11_2554 0.54 -1.7 832,011 - Ac3H11_2554 0.54 -2.3 832,011 - Ac3H11_2554 0.54 -2.7 832,011 - Ac3H11_2554 0.54 -4.2 832,011 - Ac3H11_2554 0.54 -0.6 832,022 + Ac3H11_2554 0.56 -3.7 832,142 + Ac3H11_2554 0.74 -1.5 832,325 + -4.2 832,325 + -2.8 832,326 - +0.2 832,353 + -4.7 832,353 + -3.0 832,353 + -5.1 832,354 - -1.0 832,398 + -2.5 832,398 + -2.3 832,398 + -3.8 832,398 + -4.0 832,399 - -0.2 832,482 + Ac3H11_2555 0.17 -3.5 832,482 + Ac3H11_2555 0.17 -5.2 832,482 + Ac3H11_2555 0.17 -3.0 832,483 - Ac3H11_2555 0.17 -3.7 832,539 + Ac3H11_2555 0.25 -4.2 832,540 - Ac3H11_2555 0.25 -3.6 832,540 - Ac3H11_2555 0.25 -1.4 832,540 - Ac3H11_2555 0.25 -3.5
Or see this region's nucleotide sequence