Experiment: L-Histidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2058 and Ac3H11_2059 are separated by 10 nucleotides Ac3H11_2059 and Ac3H11_2060 are separated by 208 nucleotides
Ac3H11_2058 - Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1), at 281,698 to 282,780
_2058
Ac3H11_2059 - Transaldolase (EC 2.2.1.2), at 282,791 to 283,741
_2059
Ac3H11_2060 - two-component system, sensor protein, at 283,950 to 285,344
_2060
Position (kb) 282
283
284 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 281.971 kb on + strand, within Ac3H11_2058 at 281.971 kb on + strand, within Ac3H11_2058 at 281.972 kb on - strand, within Ac3H11_2058 at 281.972 kb on - strand, within Ac3H11_2058 at 282.013 kb on + strand, within Ac3H11_2058 at 282.013 kb on + strand, within Ac3H11_2058 at 282.013 kb on + strand, within Ac3H11_2058 at 282.014 kb on - strand, within Ac3H11_2058 at 282.014 kb on - strand, within Ac3H11_2058 at 282.014 kb on - strand, within Ac3H11_2058 at 282.286 kb on + strand, within Ac3H11_2058 at 282.287 kb on - strand, within Ac3H11_2058 at 282.287 kb on - strand, within Ac3H11_2058 at 282.287 kb on - strand, within Ac3H11_2058 at 282.287 kb on - strand, within Ac3H11_2058 at 282.385 kb on + strand, within Ac3H11_2058 at 282.385 kb on + strand, within Ac3H11_2058 at 282.385 kb on + strand, within Ac3H11_2058 at 282.386 kb on - strand, within Ac3H11_2058 at 282.386 kb on - strand, within Ac3H11_2058 at 282.607 kb on + strand, within Ac3H11_2058 at 282.629 kb on - strand, within Ac3H11_2058 at 282.629 kb on - strand, within Ac3H11_2058 at 282.629 kb on - strand, within Ac3H11_2058 at 282.734 kb on + strand at 282.735 kb on - strand at 282.735 kb on - strand at 282.747 kb on + strand at 282.747 kb on + strand at 282.748 kb on - strand at 282.748 kb on - strand at 282.748 kb on - strand at 282.748 kb on - strand at 282.778 kb on + strand at 282.778 kb on + strand at 282.778 kb on + strand at 283.127 kb on + strand, within Ac3H11_2059 at 283.319 kb on + strand, within Ac3H11_2059 at 283.319 kb on + strand, within Ac3H11_2059 at 283.319 kb on + strand, within Ac3H11_2059 at 283.320 kb on - strand, within Ac3H11_2059 at 283.320 kb on - strand, within Ac3H11_2059 at 283.320 kb on - strand, within Ac3H11_2059 at 283.328 kb on + strand at 283.328 kb on + strand, within Ac3H11_2059 at 283.328 kb on + strand, within Ac3H11_2059 at 283.328 kb on + strand, within Ac3H11_2059 at 283.329 kb on - strand, within Ac3H11_2059 at 283.329 kb on - strand, within Ac3H11_2059 at 283.412 kb on + strand, within Ac3H11_2059 at 283.412 kb on + strand, within Ac3H11_2059 at 283.413 kb on - strand, within Ac3H11_2059 at 283.421 kb on + strand, within Ac3H11_2059 at 283.421 kb on + strand, within Ac3H11_2059 at 283.422 kb on - strand, within Ac3H11_2059 at 283.422 kb on - strand, within Ac3H11_2059 at 283.616 kb on + strand, within Ac3H11_2059 at 283.617 kb on - strand, within Ac3H11_2059 at 284.224 kb on + strand, within Ac3H11_2060 at 284.224 kb on + strand, within Ac3H11_2060 at 284.225 kb on - strand, within Ac3H11_2060 at 284.311 kb on + strand, within Ac3H11_2060 at 284.312 kb on - strand, within Ac3H11_2060 at 284.695 kb on - strand, within Ac3H11_2060
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (N) remove 281,971 + Ac3H11_2058 0.25 +0.5 281,971 + Ac3H11_2058 0.25 -0.6 281,972 - Ac3H11_2058 0.25 +0.0 281,972 - Ac3H11_2058 0.25 -0.5 282,013 + Ac3H11_2058 0.29 -2.7 282,013 + Ac3H11_2058 0.29 -0.7 282,013 + Ac3H11_2058 0.29 -0.4 282,014 - Ac3H11_2058 0.29 +0.1 282,014 - Ac3H11_2058 0.29 +0.5 282,014 - Ac3H11_2058 0.29 -1.3 282,286 + Ac3H11_2058 0.54 -0.1 282,287 - Ac3H11_2058 0.54 +1.2 282,287 - Ac3H11_2058 0.54 -0.3 282,287 - Ac3H11_2058 0.54 +0.2 282,287 - Ac3H11_2058 0.54 +0.8 282,385 + Ac3H11_2058 0.63 -3.0 282,385 + Ac3H11_2058 0.63 +0.7 282,385 + Ac3H11_2058 0.63 -0.1 282,386 - Ac3H11_2058 0.64 -0.7 282,386 - Ac3H11_2058 0.64 +0.8 282,607 + Ac3H11_2058 0.84 +0.2 282,629 - Ac3H11_2058 0.86 +0.2 282,629 - Ac3H11_2058 0.86 -0.3 282,629 - Ac3H11_2058 0.86 -0.3 282,734 + +1.1 282,735 - +0.2 282,735 - +0.2 282,747 + +0.1 282,747 + -0.5 282,748 - -0.2 282,748 - -1.0 282,748 - -2.5 282,748 - -1.0 282,778 + -0.8 282,778 + -0.6 282,778 + +0.3 283,127 + Ac3H11_2059 0.35 -3.5 283,319 + Ac3H11_2059 0.56 -3.0 283,319 + Ac3H11_2059 0.56 -3.3 283,319 + Ac3H11_2059 0.56 -3.8 283,320 - Ac3H11_2059 0.56 -3.7 283,320 - Ac3H11_2059 0.56 -1.8 283,320 - Ac3H11_2059 0.56 -2.0 283,328 + +2.0 283,328 + Ac3H11_2059 0.56 -2.5 283,328 + Ac3H11_2059 0.56 -2.0 283,328 + Ac3H11_2059 0.56 -3.2 283,329 - Ac3H11_2059 0.57 -2.8 283,329 - Ac3H11_2059 0.57 -1.4 283,412 + Ac3H11_2059 0.65 -1.5 283,412 + Ac3H11_2059 0.65 -3.9 283,413 - Ac3H11_2059 0.65 -1.0 283,421 + Ac3H11_2059 0.66 -2.7 283,421 + Ac3H11_2059 0.66 -1.8 283,422 - Ac3H11_2059 0.66 -3.0 283,422 - Ac3H11_2059 0.66 -3.6 283,616 + Ac3H11_2059 0.87 -3.4 283,617 - Ac3H11_2059 0.87 -3.6 284,224 + Ac3H11_2060 0.20 -3.1 284,224 + Ac3H11_2060 0.20 -3.5 284,225 - Ac3H11_2060 0.20 -3.0 284,311 + Ac3H11_2060 0.26 -0.9 284,312 - Ac3H11_2060 0.26 -0.0 284,695 - Ac3H11_2060 0.53 -1.8
Or see this region's nucleotide sequence