Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25300

Experiment: acetate 17 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25295 and AO353_25300 are separated by 789 nucleotidesAO353_25300 and AO353_25305 are separated by 137 nucleotidesAO353_25305 and AO353_25310 are separated by 1 nucleotides AO353_25295: AO353_25295 - hypothetical protein, at 5,580,006 to 5,581,415 _25295 AO353_25300: AO353_25300 - LysR family transcriptional regulator, at 5,582,205 to 5,583,119 _25300 AO353_25305: AO353_25305 - malonate transporter, at 5,583,257 to 5,584,021 _25305 AO353_25310: AO353_25310 - malonate carrier protein, at 5,584,023 to 5,584,439 _25310 Position (kb) 5582 5583 5584Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5581.249 kb on + strand, within AO353_25295at 5581.251 kb on + strand, within AO353_25295at 5581.251 kb on + strand, within AO353_25295at 5581.251 kb on + strand, within AO353_25295at 5581.251 kb on + strand, within AO353_25295at 5581.251 kb on + strand, within AO353_25295at 5581.358 kb on - strandat 5581.387 kb on + strandat 5581.416 kb on - strandat 5581.484 kb on - strandat 5581.550 kb on + strandat 5581.641 kb on + strandat 5581.642 kb on - strandat 5581.741 kb on + strandat 5581.769 kb on + strandat 5581.830 kb on - strandat 5581.839 kb on - strandat 5581.947 kb on + strandat 5581.948 kb on - strandat 5581.995 kb on + strandat 5582.017 kb on + strandat 5582.057 kb on + strandat 5582.057 kb on + strandat 5582.175 kb on + strandat 5582.176 kb on - strandat 5582.176 kb on - strandat 5582.406 kb on + strand, within AO353_25300at 5582.406 kb on + strand, within AO353_25300at 5582.407 kb on - strand, within AO353_25300at 5582.407 kb on - strand, within AO353_25300at 5582.407 kb on - strand, within AO353_25300at 5582.407 kb on - strand, within AO353_25300at 5582.410 kb on + strand, within AO353_25300at 5582.410 kb on + strand, within AO353_25300at 5582.411 kb on - strand, within AO353_25300at 5582.411 kb on - strand, within AO353_25300at 5582.411 kb on - strand, within AO353_25300at 5582.458 kb on + strand, within AO353_25300at 5582.518 kb on - strand, within AO353_25300at 5582.518 kb on - strand, within AO353_25300at 5582.622 kb on + strand, within AO353_25300at 5582.622 kb on + strand, within AO353_25300at 5582.622 kb on + strand, within AO353_25300at 5582.622 kb on + strand, within AO353_25300at 5582.623 kb on - strand, within AO353_25300at 5582.623 kb on - strand, within AO353_25300at 5582.623 kb on - strand, within AO353_25300at 5582.970 kb on + strand, within AO353_25300at 5583.099 kb on + strandat 5583.099 kb on + strandat 5583.099 kb on + strandat 5583.100 kb on - strandat 5583.100 kb on - strandat 5583.100 kb on - strandat 5583.100 kb on - strandat 5583.100 kb on - strandat 5583.100 kb on - strandat 5583.100 kb on - strandat 5583.165 kb on + strandat 5583.165 kb on + strandat 5583.165 kb on + strandat 5583.165 kb on + strandat 5583.166 kb on - strandat 5583.166 kb on - strandat 5583.166 kb on - strandat 5583.190 kb on + strandat 5583.259 kb on - strandat 5583.285 kb on + strandat 5583.579 kb on + strand, within AO353_25305at 5583.579 kb on + strand, within AO353_25305at 5583.579 kb on + strand, within AO353_25305at 5583.580 kb on - strand, within AO353_25305at 5583.580 kb on - strand, within AO353_25305at 5583.580 kb on - strand, within AO353_25305at 5583.580 kb on - strand, within AO353_25305at 5583.580 kb on - strand, within AO353_25305at 5583.580 kb on - strand, within AO353_25305at 5583.662 kb on - strand, within AO353_25305at 5583.662 kb on - strand, within AO353_25305at 5583.662 kb on - strand, within AO353_25305at 5584.021 kb on + strandat 5584.021 kb on + strandat 5584.022 kb on - strandat 5584.022 kb on - strandat 5584.022 kb on - strandat 5584.022 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate 17 mM
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5,581,249 + AO353_25295 0.88 +1.4
5,581,251 + AO353_25295 0.88 -0.4
5,581,251 + AO353_25295 0.88 -0.4
5,581,251 + AO353_25295 0.88 -0.0
5,581,251 + AO353_25295 0.88 -0.6
5,581,251 + AO353_25295 0.88 -0.9
5,581,358 - -0.8
5,581,387 + +1.4
5,581,416 - +0.4
5,581,484 - -1.1
5,581,550 + -1.4
5,581,641 + +0.6
5,581,642 - +0.2
5,581,741 + +0.1
5,581,769 + -0.2
5,581,830 - -0.5
5,581,839 - -1.2
5,581,947 + -0.5
5,581,948 - -1.7
5,581,995 + -0.1
5,582,017 + -0.4
5,582,057 + -0.9
5,582,057 + -0.4
5,582,175 + -1.1
5,582,176 - -0.1
5,582,176 - -1.1
5,582,406 + AO353_25300 0.22 -0.1
5,582,406 + AO353_25300 0.22 +0.9
5,582,407 - AO353_25300 0.22 -1.7
5,582,407 - AO353_25300 0.22 -0.7
5,582,407 - AO353_25300 0.22 +0.6
5,582,407 - AO353_25300 0.22 +0.6
5,582,410 + AO353_25300 0.22 -0.0
5,582,410 + AO353_25300 0.22 -0.3
5,582,411 - AO353_25300 0.23 -0.4
5,582,411 - AO353_25300 0.23 +0.2
5,582,411 - AO353_25300 0.23 -0.4
5,582,458 + AO353_25300 0.28 +0.3
5,582,518 - AO353_25300 0.34 +1.0
5,582,518 - AO353_25300 0.34 -1.5
5,582,622 + AO353_25300 0.46 -0.4
5,582,622 + AO353_25300 0.46 -0.9
5,582,622 + AO353_25300 0.46 +0.9
5,582,622 + AO353_25300 0.46 +0.1
5,582,623 - AO353_25300 0.46 +0.9
5,582,623 - AO353_25300 0.46 +1.5
5,582,623 - AO353_25300 0.46 -0.2
5,582,970 + AO353_25300 0.84 -0.9
5,583,099 + -0.6
5,583,099 + +0.9
5,583,099 + +0.9
5,583,100 - +0.1
5,583,100 - +0.6
5,583,100 - +0.8
5,583,100 - +1.2
5,583,100 - -0.1
5,583,100 - -1.4
5,583,100 - -1.7
5,583,165 + -2.8
5,583,165 + -0.6
5,583,165 + +0.1
5,583,165 + -0.2
5,583,166 - +1.2
5,583,166 - +0.8
5,583,166 - -1.2
5,583,190 + -0.5
5,583,259 - +0.3
5,583,285 + +0.2
5,583,579 + AO353_25305 0.42 +2.2
5,583,579 + AO353_25305 0.42 +0.9
5,583,579 + AO353_25305 0.42 +0.9
5,583,580 - AO353_25305 0.42 -0.6
5,583,580 - AO353_25305 0.42 +0.2
5,583,580 - AO353_25305 0.42 -0.5
5,583,580 - AO353_25305 0.42 +0.8
5,583,580 - AO353_25305 0.42 +1.3
5,583,580 - AO353_25305 0.42 +2.2
5,583,662 - AO353_25305 0.53 -0.4
5,583,662 - AO353_25305 0.53 +0.3
5,583,662 - AO353_25305 0.53 +0.6
5,584,021 + -0.8
5,584,021 + +1.1
5,584,022 - -0.1
5,584,022 - +0.6
5,584,022 - -0.9
5,584,022 - +0.6

Or see this region's nucleotide sequence