Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25290

Experiment: acetate 17 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25280 and AO353_25285 are separated by 151 nucleotidesAO353_25285 and AO353_25290 overlap by 4 nucleotidesAO353_25290 and AO353_25295 are separated by 3 nucleotides AO353_25280: AO353_25280 - gamma-glutamyltransferase, at 5,576,496 to 5,578,106 _25280 AO353_25285: AO353_25285 - transglutaminase, at 5,578,258 to 5,579,055 _25285 AO353_25290: AO353_25290 - hypothetical protein, at 5,579,052 to 5,580,002 _25290 AO353_25295: AO353_25295 - hypothetical protein, at 5,580,006 to 5,581,415 _25295 Position (kb) 5579 5580 5581Strain fitness (log2 ratio) -2 -1 0 1 2at 5578.076 kb on - strandat 5578.081 kb on + strandat 5578.082 kb on - strandat 5578.123 kb on + strandat 5578.228 kb on - strandat 5578.228 kb on - strandat 5578.259 kb on + strandat 5578.260 kb on - strandat 5578.260 kb on - strandat 5578.362 kb on - strand, within AO353_25285at 5578.430 kb on + strand, within AO353_25285at 5578.514 kb on + strand, within AO353_25285at 5578.514 kb on + strand, within AO353_25285at 5578.564 kb on - strand, within AO353_25285at 5578.564 kb on - strand, within AO353_25285at 5578.626 kb on + strand, within AO353_25285at 5578.641 kb on - strand, within AO353_25285at 5578.641 kb on - strand, within AO353_25285at 5578.832 kb on + strand, within AO353_25285at 5578.832 kb on + strand, within AO353_25285at 5578.833 kb on - strand, within AO353_25285at 5578.876 kb on + strand, within AO353_25285at 5578.876 kb on + strand, within AO353_25285at 5578.876 kb on + strand, within AO353_25285at 5578.876 kb on + strand, within AO353_25285at 5578.876 kb on + strand, within AO353_25285at 5578.876 kb on + strand, within AO353_25285at 5578.876 kb on + strand, within AO353_25285at 5578.876 kb on + strand, within AO353_25285at 5578.877 kb on - strand, within AO353_25285at 5578.916 kb on - strand, within AO353_25285at 5578.916 kb on - strand, within AO353_25285at 5579.019 kb on - strandat 5579.024 kb on + strandat 5579.024 kb on + strandat 5579.024 kb on + strandat 5579.024 kb on + strandat 5579.025 kb on - strandat 5579.025 kb on - strandat 5579.056 kb on - strandat 5579.068 kb on + strandat 5579.398 kb on + strand, within AO353_25290at 5579.401 kb on + strand, within AO353_25290at 5579.446 kb on + strand, within AO353_25290at 5579.525 kb on - strand, within AO353_25290at 5579.615 kb on - strand, within AO353_25290at 5579.743 kb on + strand, within AO353_25290at 5579.743 kb on + strand, within AO353_25290at 5579.743 kb on + strand, within AO353_25290at 5579.743 kb on + strand, within AO353_25290at 5579.743 kb on + strand, within AO353_25290at 5579.743 kb on + strand, within AO353_25290at 5579.743 kb on + strand, within AO353_25290at 5579.743 kb on + strand, within AO353_25290at 5579.744 kb on - strand, within AO353_25290at 5579.744 kb on - strand, within AO353_25290at 5579.744 kb on - strand, within AO353_25290at 5579.744 kb on - strand, within AO353_25290at 5579.744 kb on - strand, within AO353_25290at 5579.744 kb on - strand, within AO353_25290at 5579.747 kb on + strand, within AO353_25290at 5579.747 kb on + strand, within AO353_25290at 5579.748 kb on - strand, within AO353_25290at 5579.748 kb on - strand, within AO353_25290at 5579.824 kb on + strand, within AO353_25290at 5579.825 kb on - strand, within AO353_25290at 5579.825 kb on - strand, within AO353_25290at 5579.915 kb on - strandat 5579.975 kb on - strandat 5580.007 kb on + strandat 5580.008 kb on - strandat 5580.223 kb on + strand, within AO353_25295at 5580.223 kb on + strand, within AO353_25295at 5580.223 kb on + strandat 5580.223 kb on + strand, within AO353_25295at 5580.223 kb on + strand, within AO353_25295at 5580.223 kb on + strand, within AO353_25295at 5580.224 kb on - strand, within AO353_25295at 5580.224 kb on - strand, within AO353_25295at 5580.224 kb on - strand, within AO353_25295at 5580.224 kb on - strand, within AO353_25295at 5580.224 kb on - strand, within AO353_25295at 5580.224 kb on - strand, within AO353_25295at 5580.224 kb on - strand, within AO353_25295at 5580.224 kb on - strand, within AO353_25295at 5580.399 kb on + strand, within AO353_25295at 5580.430 kb on + strand, within AO353_25295at 5580.431 kb on - strand, within AO353_25295at 5580.431 kb on - strand, within AO353_25295at 5580.454 kb on + strand, within AO353_25295at 5580.461 kb on - strandat 5580.492 kb on + strand, within AO353_25295at 5580.493 kb on - strandat 5580.652 kb on + strand, within AO353_25295at 5580.652 kb on + strand, within AO353_25295at 5580.652 kb on + strand, within AO353_25295at 5580.653 kb on - strand, within AO353_25295at 5580.653 kb on - strand, within AO353_25295at 5580.653 kb on - strand, within AO353_25295at 5580.653 kb on - strand, within AO353_25295at 5580.653 kb on - strand, within AO353_25295at 5580.653 kb on - strandat 5580.653 kb on - strand, within AO353_25295at 5580.736 kb on + strand, within AO353_25295at 5580.736 kb on + strand, within AO353_25295at 5580.765 kb on + strand, within AO353_25295at 5580.765 kb on + strand, within AO353_25295at 5580.911 kb on - strand, within AO353_25295at 5580.911 kb on - strand, within AO353_25295at 5580.911 kb on - strand, within AO353_25295at 5580.911 kb on - strand, within AO353_25295at 5580.911 kb on - strand, within AO353_25295at 5580.911 kb on - strand, within AO353_25295at 5580.949 kb on - strand, within AO353_25295at 5580.952 kb on + strand, within AO353_25295at 5580.953 kb on - strand, within AO353_25295at 5580.953 kb on - strand, within AO353_25295at 5580.953 kb on - strand, within AO353_25295at 5580.953 kb on - strand, within AO353_25295at 5580.953 kb on - strand, within AO353_25295at 5580.955 kb on + strand, within AO353_25295at 5580.955 kb on + strand, within AO353_25295at 5580.955 kb on + strand, within AO353_25295at 5580.955 kb on + strand, within AO353_25295at 5580.956 kb on - strandat 5580.956 kb on - strand, within AO353_25295

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate 17 mM
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5,578,076 - +0.6
5,578,081 + -0.7
5,578,082 - +1.4
5,578,123 + -0.9
5,578,228 - -0.4
5,578,228 - -0.9
5,578,259 + -0.4
5,578,260 - -0.2
5,578,260 - -0.9
5,578,362 - AO353_25285 0.13 -0.2
5,578,430 + AO353_25285 0.22 +2.2
5,578,514 + AO353_25285 0.32 -1.2
5,578,514 + AO353_25285 0.32 +2.6
5,578,564 - AO353_25285 0.38 -1.4
5,578,564 - AO353_25285 0.38 +2.2
5,578,626 + AO353_25285 0.46 +0.2
5,578,641 - AO353_25285 0.48 -0.9
5,578,641 - AO353_25285 0.48 -0.4
5,578,832 + AO353_25285 0.72 -0.8
5,578,832 + AO353_25285 0.72 -0.4
5,578,833 - AO353_25285 0.72 +0.6
5,578,876 + AO353_25285 0.77 -0.6
5,578,876 + AO353_25285 0.77 +0.8
5,578,876 + AO353_25285 0.77 -0.3
5,578,876 + AO353_25285 0.77 -1.1
5,578,876 + AO353_25285 0.77 +0.1
5,578,876 + AO353_25285 0.77 -0.4
5,578,876 + AO353_25285 0.77 -1.2
5,578,876 + AO353_25285 0.77 -1.4
5,578,877 - AO353_25285 0.78 +0.6
5,578,916 - AO353_25285 0.82 -0.7
5,578,916 - AO353_25285 0.82 +1.2
5,579,019 - -1.4
5,579,024 + +0.6
5,579,024 + +1.8
5,579,024 + -0.4
5,579,024 + -0.4
5,579,025 - +0.1
5,579,025 - -0.4
5,579,056 - -1.7
5,579,068 + +0.6
5,579,398 + AO353_25290 0.36 +0.4
5,579,401 + AO353_25290 0.37 +1.6
5,579,446 + AO353_25290 0.41 -0.8
5,579,525 - AO353_25290 0.50 +2.1
5,579,615 - AO353_25290 0.59 +2.6
5,579,743 + AO353_25290 0.73 +0.3
5,579,743 + AO353_25290 0.73 +1.2
5,579,743 + AO353_25290 0.73 -1.2
5,579,743 + AO353_25290 0.73 +0.4
5,579,743 + AO353_25290 0.73 +0.2
5,579,743 + AO353_25290 0.73 +1.3
5,579,743 + AO353_25290 0.73 +1.6
5,579,743 + AO353_25290 0.73 +0.1
5,579,744 - AO353_25290 0.73 -0.2
5,579,744 - AO353_25290 0.73 +0.1
5,579,744 - AO353_25290 0.73 +0.1
5,579,744 - AO353_25290 0.73 +0.8
5,579,744 - AO353_25290 0.73 +0.2
5,579,744 - AO353_25290 0.73 -0.4
5,579,747 + AO353_25290 0.73 +1.4
5,579,747 + AO353_25290 0.73 -1.7
5,579,748 - AO353_25290 0.73 +0.6
5,579,748 - AO353_25290 0.73 +0.6
5,579,824 + AO353_25290 0.81 +0.6
5,579,825 - AO353_25290 0.81 +0.5
5,579,825 - AO353_25290 0.81 -1.4
5,579,915 - +0.3
5,579,975 - +0.7
5,580,007 + +0.6
5,580,008 - +0.5
5,580,223 + AO353_25295 0.15 +0.2
5,580,223 + AO353_25295 0.15 -1.1
5,580,223 + +0.6
5,580,223 + AO353_25295 0.15 +1.2
5,580,223 + AO353_25295 0.15 +0.6
5,580,223 + AO353_25295 0.15 -0.7
5,580,224 - AO353_25295 0.15 +0.6
5,580,224 - AO353_25295 0.15 -1.7
5,580,224 - AO353_25295 0.15 -0.9
5,580,224 - AO353_25295 0.15 -1.5
5,580,224 - AO353_25295 0.15 -0.4
5,580,224 - AO353_25295 0.15 +0.2
5,580,224 - AO353_25295 0.15 +0.1
5,580,224 - AO353_25295 0.15 +0.1
5,580,399 + AO353_25295 0.28 +0.1
5,580,430 + AO353_25295 0.30 -0.0
5,580,431 - AO353_25295 0.30 -0.4
5,580,431 - AO353_25295 0.30 -0.2
5,580,454 + AO353_25295 0.32 +0.1
5,580,461 - +0.1
5,580,492 + AO353_25295 0.34 -0.1
5,580,493 - +1.6
5,580,652 + AO353_25295 0.46 +2.2
5,580,652 + AO353_25295 0.46 -1.9
5,580,652 + AO353_25295 0.46 -0.9
5,580,653 - AO353_25295 0.46 +0.6
5,580,653 - AO353_25295 0.46 -0.0
5,580,653 - AO353_25295 0.46 +0.6
5,580,653 - AO353_25295 0.46 +0.6
5,580,653 - AO353_25295 0.46 -0.6
5,580,653 - +0.2
5,580,653 - AO353_25295 0.46 -0.0
5,580,736 + AO353_25295 0.52 +0.2
5,580,736 + AO353_25295 0.52 -0.4
5,580,765 + AO353_25295 0.54 -0.7
5,580,765 + AO353_25295 0.54 +0.2
5,580,911 - AO353_25295 0.64 +0.3
5,580,911 - AO353_25295 0.64 +0.2
5,580,911 - AO353_25295 0.64 -2.2
5,580,911 - AO353_25295 0.64 -0.4
5,580,911 - AO353_25295 0.64 -1.2
5,580,911 - AO353_25295 0.64 +0.6
5,580,949 - AO353_25295 0.67 -0.4
5,580,952 + AO353_25295 0.67 +1.0
5,580,953 - AO353_25295 0.67 -2.2
5,580,953 - AO353_25295 0.67 -1.4
5,580,953 - AO353_25295 0.67 -1.4
5,580,953 - AO353_25295 0.67 -0.7
5,580,953 - AO353_25295 0.67 -0.4
5,580,955 + AO353_25295 0.67 -1.4
5,580,955 + AO353_25295 0.67 -0.0
5,580,955 + AO353_25295 0.67 +1.2
5,580,955 + AO353_25295 0.67 +0.1
5,580,956 - +0.6
5,580,956 - AO353_25295 0.67 +0.1

Or see this region's nucleotide sequence