Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25270

Experiment: acetate 17 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25265 and AO353_25270 are separated by 95 nucleotidesAO353_25270 and AO353_25275 are separated by 500 nucleotides AO353_25265: AO353_25265 - chemotaxis protein, at 5,573,111 to 5,574,730 _25265 AO353_25270: AO353_25270 - histidine kinase, at 5,574,826 to 5,575,266 _25270 AO353_25275: AO353_25275 - hypothetical protein, at 5,575,767 to 5,576,426 _25275 Position (kb) 5574 5575 5576Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5574.192 kb on + strand, within AO353_25265at 5574.193 kb on - strand, within AO353_25265at 5574.193 kb on - strand, within AO353_25265at 5574.265 kb on + strand, within AO353_25265at 5574.265 kb on + strand, within AO353_25265at 5574.266 kb on - strand, within AO353_25265at 5574.266 kb on - strand, within AO353_25265at 5574.266 kb on - strand, within AO353_25265at 5574.268 kb on - strand, within AO353_25265at 5574.372 kb on + strand, within AO353_25265at 5574.372 kb on + strand, within AO353_25265at 5574.372 kb on + strand, within AO353_25265at 5574.372 kb on + strand, within AO353_25265at 5574.373 kb on - strand, within AO353_25265at 5574.373 kb on - strand, within AO353_25265at 5574.373 kb on - strand, within AO353_25265at 5574.373 kb on - strand, within AO353_25265at 5574.373 kb on - strand, within AO353_25265at 5574.400 kb on + strand, within AO353_25265at 5574.400 kb on + strand, within AO353_25265at 5574.402 kb on + strand, within AO353_25265at 5574.402 kb on + strand, within AO353_25265at 5574.402 kb on + strand, within AO353_25265at 5574.402 kb on + strand, within AO353_25265at 5574.402 kb on + strand, within AO353_25265at 5574.402 kb on + strand, within AO353_25265at 5574.402 kb on + strand, within AO353_25265at 5574.402 kb on + strand, within AO353_25265at 5574.402 kb on + strand, within AO353_25265at 5574.402 kb on + strand, within AO353_25265at 5574.402 kb on + strand, within AO353_25265at 5574.402 kb on + strand, within AO353_25265at 5574.403 kb on - strand, within AO353_25265at 5574.403 kb on - strand, within AO353_25265at 5574.403 kb on - strand, within AO353_25265at 5574.403 kb on - strand, within AO353_25265at 5574.403 kb on - strand, within AO353_25265at 5574.403 kb on - strand, within AO353_25265at 5574.403 kb on - strand, within AO353_25265at 5574.403 kb on - strand, within AO353_25265at 5574.403 kb on - strand, within AO353_25265at 5574.403 kb on - strand, within AO353_25265at 5574.403 kb on - strand, within AO353_25265at 5574.403 kb on - strand, within AO353_25265at 5574.651 kb on + strandat 5574.651 kb on + strandat 5574.651 kb on + strandat 5574.652 kb on - strandat 5574.652 kb on - strandat 5574.652 kb on - strandat 5574.703 kb on + strandat 5574.703 kb on + strandat 5574.703 kb on + strandat 5574.703 kb on + strandat 5574.703 kb on + strandat 5574.704 kb on - strandat 5574.719 kb on + strandat 5574.720 kb on - strandat 5574.720 kb on - strandat 5574.751 kb on + strandat 5574.751 kb on + strandat 5574.751 kb on + strandat 5574.752 kb on - strandat 5574.788 kb on + strandat 5574.788 kb on + strandat 5574.788 kb on + strandat 5574.789 kb on - strandat 5574.795 kb on - strandat 5574.795 kb on - strandat 5574.795 kb on - strandat 5574.828 kb on - strandat 5574.828 kb on - strandat 5574.842 kb on + strandat 5574.843 kb on - strandat 5574.843 kb on - strandat 5575.117 kb on + strandat 5575.132 kb on + strand, within AO353_25270at 5575.209 kb on + strand, within AO353_25270at 5575.209 kb on + strand, within AO353_25270at 5575.209 kb on + strand, within AO353_25270at 5575.209 kb on + strand, within AO353_25270at 5575.209 kb on + strand, within AO353_25270at 5575.209 kb on + strand, within AO353_25270at 5575.209 kb on + strand, within AO353_25270at 5575.210 kb on - strand, within AO353_25270at 5575.210 kb on - strand, within AO353_25270at 5575.210 kb on - strand, within AO353_25270at 5575.210 kb on - strand, within AO353_25270at 5575.213 kb on + strand, within AO353_25270at 5575.214 kb on - strand, within AO353_25270at 5575.214 kb on - strand, within AO353_25270at 5575.214 kb on - strand, within AO353_25270at 5575.214 kb on - strand, within AO353_25270at 5575.214 kb on - strand, within AO353_25270at 5575.609 kb on + strandat 5575.610 kb on - strandat 5575.611 kb on + strandat 5575.611 kb on + strandat 5575.611 kb on + strandat 5575.612 kb on - strandat 5575.676 kb on + strandat 5575.676 kb on + strandat 5575.676 kb on + strandat 5575.677 kb on - strandat 5575.677 kb on - strandat 5575.677 kb on - strandat 5575.677 kb on - strandat 5575.687 kb on - strandat 5575.696 kb on - strandat 5575.696 kb on - strandat 5576.098 kb on - strand, within AO353_25275at 5576.098 kb on - strand, within AO353_25275at 5576.098 kb on - strand, within AO353_25275at 5576.201 kb on + strand, within AO353_25275at 5576.202 kb on - strand, within AO353_25275at 5576.251 kb on - strand, within AO353_25275

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate 17 mM
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5,574,192 + AO353_25265 0.67 +0.6
5,574,193 - AO353_25265 0.67 -0.1
5,574,193 - AO353_25265 0.67 +1.1
5,574,265 + AO353_25265 0.71 -0.4
5,574,265 + AO353_25265 0.71 +0.3
5,574,266 - AO353_25265 0.71 -0.2
5,574,266 - AO353_25265 0.71 -0.2
5,574,266 - AO353_25265 0.71 -0.2
5,574,268 - AO353_25265 0.71 +0.3
5,574,372 + AO353_25265 0.78 +0.6
5,574,372 + AO353_25265 0.78 +0.1
5,574,372 + AO353_25265 0.78 +0.9
5,574,372 + AO353_25265 0.78 -0.7
5,574,373 - AO353_25265 0.78 -0.9
5,574,373 - AO353_25265 0.78 -1.7
5,574,373 - AO353_25265 0.78 -0.9
5,574,373 - AO353_25265 0.78 -0.3
5,574,373 - AO353_25265 0.78 -0.7
5,574,400 + AO353_25265 0.80 -0.7
5,574,400 + AO353_25265 0.80 +1.3
5,574,402 + AO353_25265 0.80 -0.0
5,574,402 + AO353_25265 0.80 -1.0
5,574,402 + AO353_25265 0.80 +0.0
5,574,402 + AO353_25265 0.80 -0.4
5,574,402 + AO353_25265 0.80 +0.6
5,574,402 + AO353_25265 0.80 -0.4
5,574,402 + AO353_25265 0.80 -0.0
5,574,402 + AO353_25265 0.80 +1.1
5,574,402 + AO353_25265 0.80 -1.7
5,574,402 + AO353_25265 0.80 -0.4
5,574,402 + AO353_25265 0.80 +2.6
5,574,402 + AO353_25265 0.80 -0.1
5,574,403 - AO353_25265 0.80 +0.1
5,574,403 - AO353_25265 0.80 +0.1
5,574,403 - AO353_25265 0.80 -0.6
5,574,403 - AO353_25265 0.80 -0.5
5,574,403 - AO353_25265 0.80 +0.6
5,574,403 - AO353_25265 0.80 -0.1
5,574,403 - AO353_25265 0.80 +0.6
5,574,403 - AO353_25265 0.80 +1.4
5,574,403 - AO353_25265 0.80 +0.6
5,574,403 - AO353_25265 0.80 +2.2
5,574,403 - AO353_25265 0.80 +0.4
5,574,403 - AO353_25265 0.80 +2.2
5,574,651 + -1.2
5,574,651 + +1.2
5,574,651 + +0.5
5,574,652 - +0.3
5,574,652 - +0.8
5,574,652 - +0.5
5,574,703 + -0.1
5,574,703 + +1.2
5,574,703 + -0.4
5,574,703 + -0.2
5,574,703 + -1.3
5,574,704 - -0.9
5,574,719 + +1.6
5,574,720 - -0.4
5,574,720 - +0.8
5,574,751 + +1.4
5,574,751 + -1.4
5,574,751 + -0.4
5,574,752 - -1.9
5,574,788 + +0.2
5,574,788 + +1.4
5,574,788 + +1.6
5,574,789 - -0.6
5,574,795 - -0.0
5,574,795 - +0.1
5,574,795 - +2.6
5,574,828 - +2.6
5,574,828 - +1.9
5,574,842 + +0.6
5,574,843 - +0.6
5,574,843 - +0.2
5,575,117 + +1.1
5,575,132 + AO353_25270 0.69 -0.4
5,575,209 + AO353_25270 0.87 +0.2
5,575,209 + AO353_25270 0.87 -1.9
5,575,209 + AO353_25270 0.87 -0.4
5,575,209 + AO353_25270 0.87 +0.4
5,575,209 + AO353_25270 0.87 -0.9
5,575,209 + AO353_25270 0.87 +0.2
5,575,209 + AO353_25270 0.87 -0.4
5,575,210 - AO353_25270 0.87 +1.1
5,575,210 - AO353_25270 0.87 -0.9
5,575,210 - AO353_25270 0.87 +0.2
5,575,210 - AO353_25270 0.87 -2.9
5,575,213 + AO353_25270 0.88 +1.6
5,575,214 - AO353_25270 0.88 +0.6
5,575,214 - AO353_25270 0.88 +0.6
5,575,214 - AO353_25270 0.88 -0.9
5,575,214 - AO353_25270 0.88 +2.0
5,575,214 - AO353_25270 0.88 +1.8
5,575,609 + -1.7
5,575,610 - -0.8
5,575,611 + -0.5
5,575,611 + +0.8
5,575,611 + -0.7
5,575,612 - -0.4
5,575,676 + -0.6
5,575,676 + +1.4
5,575,676 + +0.6
5,575,677 - -0.6
5,575,677 - +0.2
5,575,677 - +0.6
5,575,677 - -0.4
5,575,687 - +1.4
5,575,696 - -1.1
5,575,696 - -0.2
5,576,098 - AO353_25275 0.50 +0.4
5,576,098 - AO353_25275 0.50 -0.1
5,576,098 - AO353_25275 0.50 -1.9
5,576,201 + AO353_25275 0.66 -0.4
5,576,202 - AO353_25275 0.66 -0.8
5,576,251 - AO353_25275 0.73 -0.4

Or see this region's nucleotide sequence