Experiment: A22 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3831 and Shewana3_3832 are separated by 28 nucleotides Shewana3_3832 and Shewana3_3833 are separated by 17 nucleotides Shewana3_3833 and Shewana3_3834 are separated by 158 nucleotides Shewana3_3834 and Shewana3_3835 are separated by 56 nucleotides
Shewana3_3831: Shewana3_3831 - uncharacterized secreted protein (RefSeq), at 4,604,684 to 4,605,541
_3831
Shewana3_3832: Shewana3_3832 - transcriptional antiterminator, Rof (RefSeq), at 4,605,570 to 4,605,836
_3832
Shewana3_3833: Shewana3_3833 - hypothetical protein (RefSeq), at 4,605,854 to 4,606,189
_3833
Shewana3_3834: Shewana3_3834 - endoribonuclease L-PSP (RefSeq), at 4,606,348 to 4,606,704
_3834
Shewana3_3835: Shewana3_3835 - Na+/H+ antiporter NhaC (RefSeq), at 4,606,761 to 4,608,266
_3835
Position (kb)
4606
4607 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4605.365 kb on + strand, within Shewana3_3831 at 4605.408 kb on + strand, within Shewana3_3831 at 4605.410 kb on + strand, within Shewana3_3831 at 4605.435 kb on - strand, within Shewana3_3831 at 4605.600 kb on - strand, within Shewana3_3832 at 4605.618 kb on - strand, within Shewana3_3832 at 4605.634 kb on + strand, within Shewana3_3832 at 4605.654 kb on - strand, within Shewana3_3832 at 4605.654 kb on - strand, within Shewana3_3832 at 4605.693 kb on + strand, within Shewana3_3832 at 4605.698 kb on + strand, within Shewana3_3832 at 4605.701 kb on - strand, within Shewana3_3832 at 4605.869 kb on - strand at 4605.957 kb on + strand, within Shewana3_3833 at 4606.294 kb on - strand at 4606.530 kb on + strand, within Shewana3_3834 at 4606.639 kb on - strand, within Shewana3_3834 at 4606.691 kb on - strand at 4606.693 kb on + strand at 4606.757 kb on - strand at 4606.832 kb on - strand at 4606.950 kb on + strand, within Shewana3_3835 at 4607.156 kb on - strand, within Shewana3_3835 at 4607.251 kb on - strand, within Shewana3_3835 at 4607.402 kb on - strand, within Shewana3_3835 at 4607.494 kb on - strand, within Shewana3_3835
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.05 mg/ml remove 4,605,365 + Shewana3_3831 0.79 -0.3 4,605,408 + Shewana3_3831 0.84 -0.4 4,605,410 + Shewana3_3831 0.85 -0.5 4,605,435 - Shewana3_3831 0.88 -1.1 4,605,600 - Shewana3_3832 0.11 -1.0 4,605,618 - Shewana3_3832 0.18 -0.4 4,605,634 + Shewana3_3832 0.24 -0.0 4,605,654 - Shewana3_3832 0.31 -0.6 4,605,654 - Shewana3_3832 0.31 -0.1 4,605,693 + Shewana3_3832 0.46 -0.7 4,605,698 + Shewana3_3832 0.48 +0.1 4,605,701 - Shewana3_3832 0.49 -0.7 4,605,869 - -0.1 4,605,957 + Shewana3_3833 0.31 -0.6 4,606,294 - -0.0 4,606,530 + Shewana3_3834 0.51 +0.2 4,606,639 - Shewana3_3834 0.82 +0.0 4,606,691 - -0.6 4,606,693 + -2.9 4,606,757 - -0.3 4,606,832 - +0.2 4,606,950 + Shewana3_3835 0.13 -1.4 4,607,156 - Shewana3_3835 0.26 -0.2 4,607,251 - Shewana3_3835 0.33 -1.2 4,607,402 - Shewana3_3835 0.43 -0.1 4,607,494 - Shewana3_3835 0.49 -0.4
Or see this region's nucleotide sequence