Experiment: A22 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3635 and Shewana3_3636 are separated by 145 nucleotides Shewana3_3636 and Shewana3_3637 are separated by 168 nucleotides Shewana3_3637 and Shewana3_3638 are separated by 1 nucleotides
Shewana3_3635: Shewana3_3635 - hypothetical protein (RefSeq), at 4,366,444 to 4,366,983
_3635
Shewana3_3636: Shewana3_3636 - hypothetical protein (RefSeq), at 4,367,129 to 4,367,530
_3636
Shewana3_3637: Shewana3_3637 - hypothetical protein (RefSeq), at 4,367,699 to 4,368,850
_3637
Shewana3_3638: Shewana3_3638 - ABC-2 type transporter (RefSeq), at 4,368,852 to 4,370,147
_3638
Position (kb)
4367
4368
4369 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4366.726 kb on - strand, within Shewana3_3635 at 4366.765 kb on - strand, within Shewana3_3635 at 4366.914 kb on - strand, within Shewana3_3635 at 4366.914 kb on - strand, within Shewana3_3635 at 4366.961 kb on - strand at 4366.964 kb on + strand at 4367.254 kb on - strand, within Shewana3_3636 at 4367.270 kb on - strand, within Shewana3_3636 at 4367.272 kb on + strand, within Shewana3_3636 at 4367.283 kb on + strand, within Shewana3_3636 at 4367.464 kb on + strand, within Shewana3_3636 at 4367.789 kb on - strand at 4367.817 kb on - strand, within Shewana3_3637 at 4367.958 kb on - strand, within Shewana3_3637 at 4368.018 kb on - strand, within Shewana3_3637 at 4368.186 kb on + strand, within Shewana3_3637 at 4368.281 kb on - strand, within Shewana3_3637 at 4368.294 kb on + strand, within Shewana3_3637 at 4368.321 kb on - strand, within Shewana3_3637 at 4368.499 kb on + strand, within Shewana3_3637 at 4368.752 kb on - strand at 4368.797 kb on - strand at 4368.876 kb on - strand at 4369.206 kb on - strand, within Shewana3_3638 at 4369.259 kb on + strand, within Shewana3_3638 at 4369.267 kb on - strand, within Shewana3_3638 at 4369.423 kb on + strand, within Shewana3_3638 at 4369.423 kb on + strand, within Shewana3_3638 at 4369.464 kb on - strand, within Shewana3_3638 at 4369.487 kb on - strand, within Shewana3_3638 at 4369.534 kb on + strand, within Shewana3_3638 at 4369.624 kb on - strand, within Shewana3_3638 at 4369.780 kb on + strand, within Shewana3_3638 at 4369.788 kb on - strand, within Shewana3_3638 at 4369.788 kb on - strand, within Shewana3_3638 at 4369.788 kb on - strand, within Shewana3_3638 at 4369.793 kb on - strand, within Shewana3_3638 at 4369.813 kb on + strand, within Shewana3_3638
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.05 mg/ml remove 4,366,726 - Shewana3_3635 0.52 +1.7 4,366,765 - Shewana3_3635 0.59 +1.7 4,366,914 - Shewana3_3635 0.87 +0.7 4,366,914 - Shewana3_3635 0.87 -0.6 4,366,961 - +2.7 4,366,964 + -0.7 4,367,254 - Shewana3_3636 0.31 +1.1 4,367,270 - Shewana3_3636 0.35 -0.7 4,367,272 + Shewana3_3636 0.36 +0.1 4,367,283 + Shewana3_3636 0.38 -0.2 4,367,464 + Shewana3_3636 0.83 +0.1 4,367,789 - +0.3 4,367,817 - Shewana3_3637 0.10 -1.2 4,367,958 - Shewana3_3637 0.22 -1.3 4,368,018 - Shewana3_3637 0.28 -0.3 4,368,186 + Shewana3_3637 0.42 -0.8 4,368,281 - Shewana3_3637 0.51 -1.0 4,368,294 + Shewana3_3637 0.52 +1.7 4,368,321 - Shewana3_3637 0.54 -1.0 4,368,499 + Shewana3_3637 0.69 -0.7 4,368,752 - -0.0 4,368,797 - -0.6 4,368,876 - +0.7 4,369,206 - Shewana3_3638 0.27 +1.7 4,369,259 + Shewana3_3638 0.31 +1.7 4,369,267 - Shewana3_3638 0.32 -0.4 4,369,423 + Shewana3_3638 0.44 +0.3 4,369,423 + Shewana3_3638 0.44 -1.9 4,369,464 - Shewana3_3638 0.47 +0.1 4,369,487 - Shewana3_3638 0.49 -1.1 4,369,534 + Shewana3_3638 0.53 -1.8 4,369,624 - Shewana3_3638 0.60 -0.5 4,369,780 + Shewana3_3638 0.72 -0.1 4,369,788 - Shewana3_3638 0.72 +1.1 4,369,788 - Shewana3_3638 0.72 +0.1 4,369,788 - Shewana3_3638 0.72 -0.7 4,369,793 - Shewana3_3638 0.73 +1.3 4,369,813 + Shewana3_3638 0.74 -0.1
Or see this region's nucleotide sequence