Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3394

Experiment: A22 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3393 and Shewana3_3394 are separated by 35 nucleotidesShewana3_3394 and Shewana3_3395 are separated by 11 nucleotidesShewana3_3395 and Shewana3_3396 are separated by 12 nucleotides Shewana3_3393: Shewana3_3393 - ABC transporter related (RefSeq), at 4,062,366 to 4,064,279 _3393 Shewana3_3394: Shewana3_3394 - hypothetical protein (RefSeq), at 4,064,315 to 4,064,776 _3394 Shewana3_3395: Shewana3_3395 - glutathione-dependent formaldehyde-activating, GFA (RefSeq), at 4,064,788 to 4,065,198 _3395 Shewana3_3396: Shewana3_3396 - glucose-methanol-choline oxidoreductase (RefSeq), at 4,065,211 to 4,066,812 _3396 Position (kb) 4064 4065Strain fitness (log2 ratio) -2 -1 0 1at 4063.320 kb on + strand, within Shewana3_3393at 4063.325 kb on + strand, within Shewana3_3393at 4063.359 kb on + strand, within Shewana3_3393at 4063.406 kb on - strand, within Shewana3_3393at 4063.698 kb on + strand, within Shewana3_3393at 4063.886 kb on - strand, within Shewana3_3393at 4064.169 kb on + strandat 4064.224 kb on + strandat 4064.232 kb on - strandat 4064.456 kb on - strand, within Shewana3_3394at 4064.556 kb on + strand, within Shewana3_3394at 4064.561 kb on + strand, within Shewana3_3394at 4064.619 kb on + strand, within Shewana3_3394at 4064.815 kb on - strandat 4065.183 kb on + strandat 4065.221 kb on - strandat 4065.296 kb on - strandat 4065.336 kb on - strandat 4065.744 kb on + strand, within Shewana3_3396at 4065.744 kb on + strand, within Shewana3_3396

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.05 mg/ml
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4,063,320 + Shewana3_3393 0.50 -0.8
4,063,325 + Shewana3_3393 0.50 -0.7
4,063,359 + Shewana3_3393 0.52 -0.5
4,063,406 - Shewana3_3393 0.54 +0.1
4,063,698 + Shewana3_3393 0.70 -1.4
4,063,886 - Shewana3_3393 0.79 -0.2
4,064,169 + -1.0
4,064,224 + -0.2
4,064,232 - -1.5
4,064,456 - Shewana3_3394 0.31 -1.0
4,064,556 + Shewana3_3394 0.52 -0.5
4,064,561 + Shewana3_3394 0.53 -2.1
4,064,619 + Shewana3_3394 0.66 +1.5
4,064,815 - -0.0
4,065,183 + -0.3
4,065,221 - -1.0
4,065,296 - +0.4
4,065,336 - +0.6
4,065,744 + Shewana3_3396 0.33 -0.5
4,065,744 + Shewana3_3396 0.33 +1.5

Or see this region's nucleotide sequence