Experiment: A22 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3393 and Shewana3_3394 are separated by 35 nucleotides Shewana3_3394 and Shewana3_3395 are separated by 11 nucleotides Shewana3_3395 and Shewana3_3396 are separated by 12 nucleotides
Shewana3_3393: Shewana3_3393 - ABC transporter related (RefSeq), at 4,062,366 to 4,064,279
_3393
Shewana3_3394: Shewana3_3394 - hypothetical protein (RefSeq), at 4,064,315 to 4,064,776
_3394
Shewana3_3395: Shewana3_3395 - glutathione-dependent formaldehyde-activating, GFA (RefSeq), at 4,064,788 to 4,065,198
_3395
Shewana3_3396: Shewana3_3396 - glucose-methanol-choline oxidoreductase (RefSeq), at 4,065,211 to 4,066,812
_3396
Position (kb)
4064
4065 Strain fitness (log2 ratio)
-2
-1
0
1 at 4063.320 kb on + strand, within Shewana3_3393 at 4063.325 kb on + strand, within Shewana3_3393 at 4063.359 kb on + strand, within Shewana3_3393 at 4063.406 kb on - strand, within Shewana3_3393 at 4063.698 kb on + strand, within Shewana3_3393 at 4063.886 kb on - strand, within Shewana3_3393 at 4064.169 kb on + strand at 4064.224 kb on + strand at 4064.232 kb on - strand at 4064.456 kb on - strand, within Shewana3_3394 at 4064.556 kb on + strand, within Shewana3_3394 at 4064.561 kb on + strand, within Shewana3_3394 at 4064.619 kb on + strand, within Shewana3_3394 at 4064.815 kb on - strand at 4065.183 kb on + strand at 4065.221 kb on - strand at 4065.296 kb on - strand at 4065.336 kb on - strand at 4065.744 kb on + strand, within Shewana3_3396 at 4065.744 kb on + strand, within Shewana3_3396
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.05 mg/ml remove 4,063,320 + Shewana3_3393 0.50 -0.8 4,063,325 + Shewana3_3393 0.50 -0.7 4,063,359 + Shewana3_3393 0.52 -0.5 4,063,406 - Shewana3_3393 0.54 +0.1 4,063,698 + Shewana3_3393 0.70 -1.4 4,063,886 - Shewana3_3393 0.79 -0.2 4,064,169 + -1.0 4,064,224 + -0.2 4,064,232 - -1.5 4,064,456 - Shewana3_3394 0.31 -1.0 4,064,556 + Shewana3_3394 0.52 -0.5 4,064,561 + Shewana3_3394 0.53 -2.1 4,064,619 + Shewana3_3394 0.66 +1.5 4,064,815 - -0.0 4,065,183 + -0.3 4,065,221 - -1.0 4,065,296 - +0.4 4,065,336 - +0.6 4,065,744 + Shewana3_3396 0.33 -0.5 4,065,744 + Shewana3_3396 0.33 +1.5
Or see this region's nucleotide sequence