Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3282

Experiment: A22 0.05 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.05 mg/ml
3,921,503	+				+2.5
3,921,641	-		Shewana3_3281	0.19	-0.3
3,921,729	-		Shewana3_3281	0.32	-0.3
3,921,739	-		Shewana3_3281	0.33	-0.7
3,921,895	-		Shewana3_3281	0.54	+0.1
3,921,990	+		Shewana3_3281	0.68	-0.7
3,922,207	+				-0.1
3,922,215	-				-0.1
3,922,404	+				-0.3
3,922,489	+				+0.1
3,922,605	-				-0.8
3,922,611	-				-0.4
3,922,639	-				-0.6
3,923,143	+	metH	Shewana3_3282	0.19	+1.2
3,923,214	+	metH	Shewana3_3282	0.21	-0.1
3,923,214	+	metH	Shewana3_3282	0.21	-0.1
3,923,222	-	metH	Shewana3_3282	0.21	-0.2
3,923,222	-	metH	Shewana3_3282	0.21	-0.3
3,923,222	-	metH	Shewana3_3282	0.21	+0.2
3,923,230	+	metH	Shewana3_3282	0.21	-0.8
3,923,325	+	metH	Shewana3_3282	0.24	-0.3
3,923,520	+	metH	Shewana3_3282	0.29	+0.3
3,923,728	-	metH	Shewana3_3282	0.35	-0.8
3,923,803	-	metH	Shewana3_3282	0.37	-0.5
3,924,109	+	metH	Shewana3_3282	0.45	-0.4
3,924,109	+	metH	Shewana3_3282	0.45	-0.3
3,924,117	-	metH	Shewana3_3282	0.45	+0.3
3,924,344	+	metH	Shewana3_3282	0.51	-0.3
3,924,344	+	metH	Shewana3_3282	0.51	-1.1
3,924,369	-	metH	Shewana3_3282	0.52	+0.5
3,924,478	+	metH	Shewana3_3282	0.55	-0.4
3,924,486	-	metH	Shewana3_3282	0.55	+1.5
3,924,574	-	metH	Shewana3_3282	0.57	+0.5
3,924,583	-	metH	Shewana3_3282	0.58	-1.3
3,924,669	+	metH	Shewana3_3282	0.60	-0.4
3,924,704	+	metH	Shewana3_3282	0.61	-0.2
3,924,834	-	metH	Shewana3_3282	0.64	+0.2
3,925,220	+	metH	Shewana3_3282	0.75	-1.8
3,925,244	-	metH	Shewana3_3282	0.75	-0.1
3,925,397	-	metH	Shewana3_3282	0.79	-0.8
3,925,468	+	metH	Shewana3_3282	0.81	-0.4
3,925,468	+	metH	Shewana3_3282	0.81	-0.9
3,925,503	+	metH	Shewana3_3282	0.82	-0.2
3,925,597	+	metH	Shewana3_3282	0.85	-0.6
3,925,662	+	metH	Shewana3_3282	0.86	+0.2
3,925,889	+				-1.1
3,926,098	+				-0.8
3,926,105	+				-0.0
3,926,144	+				-0.6
3,926,150	+				-0.2
3,926,157	-				+0.5
3,926,169	+				-0.1
3,926,174	+				-1.3
3,926,186	+				-1.0
3,926,196	-				+0.1
3,926,222	-				+1.5
3,926,315	-				-0.2
3,926,336	-				-0.6
3,926,336	-				-0.6
3,926,336	-				-0.7
3,926,336	-				-0.4
3,926,336	-				-0.6
3,926,396	+				+1.5
3,926,410	+				+1.5
3,926,416	+				-0.8
3,926,424	-				-0.2
3,926,461	-				-0.5
3,926,467	+				+1.5
3,926,530	+				+0.5
3,926,537	+				-0.9
3,926,537	+				+1.5
3,926,537	+				+1.5
3,926,538	-				-0.3
3,926,538	-				+0.5
3,926,539	+				+1.5
3,926,545	-				-0.9
3,926,545	-				-0.1
3,926,547	-				+0.4
3,926,587	-				-0.8
3,926,587	-				-0.6
3,926,601	-				-1.5
3,926,689	+				-0.3
3,926,689	+				+1.5
3,926,697	-				-0.5
3,926,697	-				-3.4
3,926,697	-				+0.2
3,926,718	+				+1.5
3,926,718	+				+0.5
3,926,718	+				+1.5
3,926,782	-		Shewana3_3283	0.14	-0.7
3,926,825	-		Shewana3_3283	0.23	+0.0
3,926,825	-		Shewana3_3283	0.23	-0.4
3,926,876	-		Shewana3_3283	0.33	-0.2
3,926,899	+		Shewana3_3283	0.37	+1.5
3,926,907	-		Shewana3_3283	0.39	-0.6
3,926,925	-		Shewana3_3283	0.42	-0.0
3,926,930	-		Shewana3_3283	0.43	-1.3
3,926,934	+		Shewana3_3283	0.44	+1.5
3,926,934	+		Shewana3_3283	0.44	+0.2
3,926,940	+		Shewana3_3283	0.45	+0.3
3,926,942	+		Shewana3_3283	0.45	-0.1
3,926,942	+		Shewana3_3283	0.45	+1.5
3,926,942	+		Shewana3_3283	0.45	+1.5
3,926,942	-		Shewana3_3283	0.45	+0.6
3,926,942	-		Shewana3_3283	0.45	-0.1
3,926,942	-		Shewana3_3283	0.45	-0.5
3,926,943	-		Shewana3_3283	0.45	-0.4
3,926,948	-		Shewana3_3283	0.46	-0.5
3,926,948	-		Shewana3_3283	0.46	-1.2
3,926,948	-		Shewana3_3283	0.46	-0.0
3,926,950	-		Shewana3_3283	0.47	-1.2
3,926,950	-		Shewana3_3283	0.47	+0.2
3,926,950	-		Shewana3_3283	0.47	-0.7
3,926,950	-		Shewana3_3283	0.47	-1.1
3,926,950	-		Shewana3_3283	0.47	-0.3
3,926,950	-		Shewana3_3283	0.47	-0.3
3,926,953	-		Shewana3_3283	0.47	+1.1
3,926,955	-		Shewana3_3283	0.48	-0.5
3,926,955	-		Shewana3_3283	0.48	-0.0
3,926,965	+		Shewana3_3283	0.50	+1.5
3,926,965	+				+1.5
3,926,966	-		Shewana3_3283	0.50	-0.3
3,926,973	-		Shewana3_3283	0.51	+0.2
3,926,973	-		Shewana3_3283	0.51	-0.5
3,927,011	+		Shewana3_3283	0.59	+1.5
3,927,032	+		Shewana3_3283	0.63	+1.5
3,927,032	-		Shewana3_3283	0.63	+0.1
3,927,034	+		Shewana3_3283	0.63	-0.5
3,927,040	-		Shewana3_3283	0.64	+0.5
3,927,040	-		Shewana3_3283	0.64	+0.7
3,927,045	-		Shewana3_3283	0.65	+0.8
3,927,046	+		Shewana3_3283	0.65	+0.9
3,927,054	-		Shewana3_3283	0.67	-0.3
3,927,054	-		Shewana3_3283	0.67	-1.4
3,927,054	-		Shewana3_3283	0.67	+0.9
3,927,054	-		Shewana3_3283	0.67	-1.1
3,927,054	-		Shewana3_3283	0.67	+0.9
3,927,058	+		Shewana3_3283	0.68	+1.5
3,927,136	-		Shewana3_3283	0.83	+0.5