Experiment: A22 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3185 and Shewana3_3186 are separated by 28 nucleotides Shewana3_3186 and Shewana3_3187 are separated by 157 nucleotides Shewana3_3187 and cysM are separated by 168 nucleotides
Shewana3_3185: Shewana3_3185 - ATPase domain-containing protein (RefSeq), at 3,823,521 to 3,824,789
_3185
Shewana3_3186: Shewana3_3186 - hypothetical protein (RefSeq), at 3,824,818 to 3,825,126
_3186
Shewana3_3187: Shewana3_3187 - hypothetical protein (RefSeq), at 3,825,284 to 3,825,820
_3187
Shewana3_3188: cysM - cysteine synthase B (RefSeq), at 3,825,989 to 3,826,867
cysM
Position (kb)
3825
3826 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3824.322 kb on - strand, within Shewana3_3185 at 3824.368 kb on - strand, within Shewana3_3185 at 3824.398 kb on + strand, within Shewana3_3185 at 3824.646 kb on - strand, within Shewana3_3185 at 3824.679 kb on - strand at 3824.709 kb on + strand at 3824.727 kb on - strand at 3824.757 kb on + strand at 3825.027 kb on + strand, within Shewana3_3186 at 3825.071 kb on + strand, within Shewana3_3186 at 3825.387 kb on - strand, within Shewana3_3187 at 3825.396 kb on + strand, within Shewana3_3187 at 3825.421 kb on - strand, within Shewana3_3187 at 3825.441 kb on - strand, within Shewana3_3187 at 3825.485 kb on - strand, within Shewana3_3187 at 3825.563 kb on + strand, within Shewana3_3187 at 3825.568 kb on + strand, within Shewana3_3187 at 3825.576 kb on - strand, within Shewana3_3187 at 3825.584 kb on - strand, within Shewana3_3187 at 3825.820 kb on + strand at 3825.825 kb on + strand at 3825.833 kb on - strand at 3826.082 kb on - strand, within cysM at 3826.136 kb on + strand, within cysM at 3826.136 kb on + strand, within cysM at 3826.136 kb on + strand, within cysM at 3826.326 kb on - strand, within cysM at 3826.336 kb on - strand, within cysM at 3826.542 kb on + strand, within cysM at 3826.550 kb on - strand, within cysM at 3826.560 kb on + strand, within cysM at 3826.675 kb on - strand, within cysM at 3826.724 kb on - strand, within cysM at 3826.731 kb on + strand, within cysM at 3826.755 kb on + strand, within cysM at 3826.763 kb on - strand, within cysM at 3826.765 kb on - strand, within cysM
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.05 mg/ml remove 3,824,322 - Shewana3_3185 0.63 -0.7 3,824,368 - Shewana3_3185 0.67 -0.3 3,824,398 + Shewana3_3185 0.69 -0.6 3,824,646 - Shewana3_3185 0.89 +0.3 3,824,679 - +1.2 3,824,709 + -0.2 3,824,727 - +1.5 3,824,757 + -0.3 3,825,027 + Shewana3_3186 0.68 -1.0 3,825,071 + Shewana3_3186 0.82 +1.5 3,825,387 - Shewana3_3187 0.19 -0.4 3,825,396 + Shewana3_3187 0.21 -0.1 3,825,421 - Shewana3_3187 0.26 +0.4 3,825,441 - Shewana3_3187 0.29 -0.9 3,825,485 - Shewana3_3187 0.37 -0.4 3,825,563 + Shewana3_3187 0.52 +0.1 3,825,568 + Shewana3_3187 0.53 -0.2 3,825,576 - Shewana3_3187 0.54 +0.3 3,825,584 - Shewana3_3187 0.56 +0.1 3,825,820 + +0.1 3,825,825 + -0.6 3,825,833 - -0.9 3,826,082 - cysM Shewana3_3188 0.11 -0.9 3,826,136 + cysM Shewana3_3188 0.17 -0.1 3,826,136 + cysM Shewana3_3188 0.17 -0.5 3,826,136 + cysM Shewana3_3188 0.17 +0.5 3,826,326 - cysM Shewana3_3188 0.38 -0.3 3,826,336 - cysM Shewana3_3188 0.39 -1.1 3,826,542 + cysM Shewana3_3188 0.63 +1.9 3,826,550 - cysM Shewana3_3188 0.64 -2.9 3,826,560 + cysM Shewana3_3188 0.65 -0.1 3,826,675 - cysM Shewana3_3188 0.78 -0.4 3,826,724 - cysM Shewana3_3188 0.84 -2.1 3,826,731 + cysM Shewana3_3188 0.84 +0.5 3,826,755 + cysM Shewana3_3188 0.87 -1.7 3,826,763 - cysM Shewana3_3188 0.88 -0.8 3,826,765 - cysM Shewana3_3188 0.88 +0.1
Or see this region's nucleotide sequence