Experiment: A22 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3163 and Shewana3_3164 are separated by 377 nucleotides Shewana3_3164 and Shewana3_3165 are separated by 8 nucleotides
Shewana3_3163: Shewana3_3163 - sodium:dicarboxylate symporter (RefSeq), at 3,794,450 to 3,795,703
_3163
Shewana3_3164: Shewana3_3164 - sodium ion-translocating decarboxylase, beta subunit (RefSeq), at 3,796,081 to 3,797,211
_3164
Shewana3_3165: Shewana3_3165 - oxaloacetate decarboxylase (RefSeq), at 3,797,220 to 3,799,055
_3165
Position (kb)
3796
3797
3798 Strain fitness (log2 ratio)
-1
0
1
2 at 3795.125 kb on - strand, within Shewana3_3163 at 3795.167 kb on + strand, within Shewana3_3163 at 3795.167 kb on + strand, within Shewana3_3163 at 3795.177 kb on - strand, within Shewana3_3163 at 3795.326 kb on + strand, within Shewana3_3163 at 3795.581 kb on + strand at 3795.658 kb on + strand at 3795.666 kb on - strand at 3795.666 kb on - strand at 3795.823 kb on + strand at 3796.131 kb on - strand at 3796.131 kb on - strand at 3796.454 kb on + strand, within Shewana3_3164 at 3796.516 kb on + strand, within Shewana3_3164 at 3796.516 kb on + strand, within Shewana3_3164 at 3796.609 kb on - strand, within Shewana3_3164 at 3796.611 kb on + strand, within Shewana3_3164 at 3796.744 kb on - strand, within Shewana3_3164 at 3797.000 kb on + strand, within Shewana3_3164 at 3797.008 kb on - strand, within Shewana3_3164 at 3797.099 kb on - strand at 3797.121 kb on + strand at 3797.124 kb on - strand at 3797.151 kb on - strand at 3797.508 kb on + strand, within Shewana3_3165 at 3797.597 kb on - strand, within Shewana3_3165 at 3797.768 kb on - strand, within Shewana3_3165 at 3798.068 kb on + strand, within Shewana3_3165 at 3798.182 kb on - strand, within Shewana3_3165 at 3798.182 kb on - strand, within Shewana3_3165
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.05 mg/ml remove 3,795,125 - Shewana3_3163 0.54 +1.4 3,795,167 + Shewana3_3163 0.57 -0.1 3,795,167 + Shewana3_3163 0.57 -0.6 3,795,177 - Shewana3_3163 0.58 +1.4 3,795,326 + Shewana3_3163 0.70 +0.2 3,795,581 + -0.6 3,795,658 + -0.3 3,795,666 - -0.1 3,795,666 - +1.4 3,795,823 + +0.4 3,796,131 - -0.4 3,796,131 - +0.6 3,796,454 + Shewana3_3164 0.33 +2.0 3,796,516 + Shewana3_3164 0.38 +2.4 3,796,516 + Shewana3_3164 0.38 -0.1 3,796,609 - Shewana3_3164 0.47 +1.6 3,796,611 + Shewana3_3164 0.47 +0.4 3,796,744 - Shewana3_3164 0.59 -0.7 3,797,000 + Shewana3_3164 0.81 +0.4 3,797,008 - Shewana3_3164 0.82 +0.4 3,797,099 - -1.1 3,797,121 + +1.4 3,797,124 - +0.2 3,797,151 - +0.4 3,797,508 + Shewana3_3165 0.16 +0.4 3,797,597 - Shewana3_3165 0.21 +0.5 3,797,768 - Shewana3_3165 0.30 +2.4 3,798,068 + Shewana3_3165 0.46 +1.4 3,798,182 - Shewana3_3165 0.52 +0.1 3,798,182 - Shewana3_3165 0.52 +2.4
Or see this region's nucleotide sequence