Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3135

Experiment: A22 0.05 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntispH and Shewana3_3134 are separated by 1 nucleotidesShewana3_3134 and lspA overlap by 1 nucleotideslspA and ileS are separated by 9 nucleotides Shewana3_3133: ispH - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (RefSeq), at 3,758,789 to 3,759,745 ispH Shewana3_3134: Shewana3_3134 - peptidylprolyl isomerase, FKBP-type (RefSeq), at 3,759,747 to 3,760,169 _3134 Shewana3_3135: lspA - lipoprotein signal peptidase (RefSeq), at 3,760,169 to 3,760,681 lspA Shewana3_3136: ileS - isoleucyl-tRNA synthetase (RefSeq), at 3,760,691 to 3,763,513 ileS Position (kb) 3760 3761Strain fitness (log2 ratio) -2 -1 0 1at 3760.074 kb on - strand, within Shewana3_3134

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.05 mg/ml
remove
3,760,074 - Shewana3_3134 0.77 -1.9

Or see this region's nucleotide sequence