Experiment: A22 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3115 and Shewana3_3116 are separated by 28 nucleotides Shewana3_3116 and Shewana3_3117 overlap by 1 nucleotides
Shewana3_3115: Shewana3_3115 - beta-N-acetylhexosaminidase (RefSeq), at 3,735,922 to 3,738,729
_3115
Shewana3_3116: Shewana3_3116 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 3,738,758 to 3,740,245
_3116
Shewana3_3117: Shewana3_3117 - hypothetical protein (RefSeq), at 3,740,245 to 3,741,234
_3117
Position (kb)
3738
3739
3740
3741 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3737.800 kb on - strand, within Shewana3_3115 at 3737.836 kb on + strand, within Shewana3_3115 at 3737.844 kb on - strand, within Shewana3_3115 at 3737.978 kb on + strand, within Shewana3_3115 at 3737.995 kb on - strand, within Shewana3_3115 at 3738.176 kb on - strand, within Shewana3_3115 at 3738.216 kb on - strand, within Shewana3_3115 at 3738.250 kb on - strand, within Shewana3_3115 at 3738.549 kb on - strand at 3738.583 kb on - strand at 3738.693 kb on - strand at 3738.848 kb on - strand at 3738.865 kb on - strand at 3738.906 kb on + strand at 3738.911 kb on + strand, within Shewana3_3116 at 3738.988 kb on + strand, within Shewana3_3116 at 3739.034 kb on + strand, within Shewana3_3116 at 3739.034 kb on + strand, within Shewana3_3116 at 3739.120 kb on + strand, within Shewana3_3116 at 3739.373 kb on - strand, within Shewana3_3116 at 3739.405 kb on - strand, within Shewana3_3116 at 3739.502 kb on - strand, within Shewana3_3116 at 3739.548 kb on + strand, within Shewana3_3116 at 3739.736 kb on - strand, within Shewana3_3116 at 3739.736 kb on - strand, within Shewana3_3116 at 3739.736 kb on - strand, within Shewana3_3116 at 3739.860 kb on + strand, within Shewana3_3116 at 3739.868 kb on - strand, within Shewana3_3116 at 3740.179 kb on - strand at 3740.349 kb on + strand, within Shewana3_3117 at 3740.357 kb on - strand, within Shewana3_3117 at 3740.551 kb on - strand, within Shewana3_3117 at 3740.820 kb on - strand, within Shewana3_3117 at 3740.958 kb on + strand, within Shewana3_3117 at 3740.966 kb on - strand, within Shewana3_3117 at 3741.139 kb on - strand at 3741.231 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.05 mg/ml remove 3,737,800 - Shewana3_3115 0.67 +0.4 3,737,836 + Shewana3_3115 0.68 -0.2 3,737,844 - Shewana3_3115 0.68 -1.3 3,737,978 + Shewana3_3115 0.73 +1.4 3,737,995 - Shewana3_3115 0.74 -0.7 3,738,176 - Shewana3_3115 0.80 -0.2 3,738,216 - Shewana3_3115 0.82 -0.7 3,738,250 - Shewana3_3115 0.83 -0.1 3,738,549 - -0.7 3,738,583 - +0.3 3,738,693 - -0.8 3,738,848 - -0.6 3,738,865 - -0.4 3,738,906 + -0.2 3,738,911 + Shewana3_3116 0.10 -0.2 3,738,988 + Shewana3_3116 0.15 -0.7 3,739,034 + Shewana3_3116 0.19 -0.2 3,739,034 + Shewana3_3116 0.19 -0.1 3,739,120 + Shewana3_3116 0.24 -0.4 3,739,373 - Shewana3_3116 0.41 +0.3 3,739,405 - Shewana3_3116 0.43 +0.9 3,739,502 - Shewana3_3116 0.50 -0.7 3,739,548 + Shewana3_3116 0.53 +1.9 3,739,736 - Shewana3_3116 0.66 -0.2 3,739,736 - Shewana3_3116 0.66 -0.5 3,739,736 - Shewana3_3116 0.66 +1.2 3,739,860 + Shewana3_3116 0.74 -0.2 3,739,868 - Shewana3_3116 0.75 -0.1 3,740,179 - -0.6 3,740,349 + Shewana3_3117 0.11 -1.5 3,740,357 - Shewana3_3117 0.11 +0.2 3,740,551 - Shewana3_3117 0.31 +0.4 3,740,820 - Shewana3_3117 0.58 +1.4 3,740,958 + Shewana3_3117 0.72 -0.4 3,740,966 - Shewana3_3117 0.73 -2.1 3,741,139 - -1.4 3,741,231 + -0.0
Or see this region's nucleotide sequence