Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3057
Experiment: A22 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | A22 0.05 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,662,770 | - | Shewana3_3055 | 0.45 | +0.3 | |
3,662,872 | - | Shewana3_3055 | 0.61 | +0.4 | |
3,662,889 | + | Shewana3_3055 | 0.64 | +0.4 | |
3,662,922 | + | Shewana3_3055 | 0.69 | +0.3 | |
3,663,140 | + | -0.8 | |||
3,663,188 | - | Shewana3_3056 | 0.15 | -0.6 | |
3,663,254 | + | Shewana3_3056 | 0.28 | +0.1 | |
3,663,444 | + | Shewana3_3056 | 0.67 | -0.5 | |
3,663,500 | + | Shewana3_3056 | 0.78 | +1.0 | |
3,663,515 | + | Shewana3_3056 | 0.81 | -1.0 | |
3,663,589 | - | -1.0 | |||
3,663,769 | + | -0.6 | |||
3,663,931 | + | Shewana3_3057 | 0.47 | -2.8 | |
3,664,052 | - | Shewana3_3057 | 0.75 | -0.2 | |
3,664,303 | + | +1.4 | |||
3,664,314 | + | -0.2 |
Or see this region's nucleotide sequence