Experiment: A22 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2969 and Shewana3_2970 are separated by 246 nucleotides Shewana3_2970 and Shewana3_2971 are separated by 255 nucleotides Shewana3_2971 and Shewana3_2972 are separated by 20 nucleotides
Shewana3_2969: Shewana3_2969 - transglutaminase domain-containing protein (RefSeq), at 3,569,325 to 3,570,464
_2969
Shewana3_2970: Shewana3_2970 - HAAAP family transport protein (RefSeq), at 3,570,711 to 3,571,982
_2970
Shewana3_2971: Shewana3_2971 - putative endoribonuclease L-PSP (RefSeq), at 3,572,238 to 3,572,621
_2971
Shewana3_2972: Shewana3_2972 - hypothetical protein (RefSeq), at 3,572,642 to 3,573,916
_2972
Position (kb)
3570
3571
3572 Strain fitness (log2 ratio)
-2
-1
0
1 at 3569.878 kb on + strand, within Shewana3_2969 at 3569.992 kb on + strand, within Shewana3_2969 at 3570.365 kb on - strand at 3570.366 kb on + strand at 3570.585 kb on - strand at 3570.592 kb on - strand at 3570.744 kb on + strand at 3570.835 kb on - strand at 3570.835 kb on - strand at 3570.915 kb on - strand, within Shewana3_2970 at 3571.091 kb on + strand, within Shewana3_2970 at 3571.099 kb on - strand, within Shewana3_2970 at 3571.099 kb on - strand, within Shewana3_2970 at 3571.209 kb on - strand, within Shewana3_2970 at 3571.316 kb on + strand, within Shewana3_2970 at 3571.406 kb on - strand, within Shewana3_2970 at 3571.447 kb on - strand, within Shewana3_2970 at 3571.481 kb on + strand, within Shewana3_2970 at 3571.550 kb on + strand, within Shewana3_2970 at 3571.983 kb on + strand at 3572.266 kb on + strand at 3572.364 kb on + strand, within Shewana3_2971 at 3572.696 kb on + strand at 3572.697 kb on + strand at 3572.820 kb on + strand, within Shewana3_2972
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.05 mg/ml remove 3,569,878 + Shewana3_2969 0.49 -2.0 3,569,992 + Shewana3_2969 0.59 -0.5 3,570,365 - +0.8 3,570,366 + -0.8 3,570,585 - -1.6 3,570,592 - -0.8 3,570,744 + +0.4 3,570,835 - +0.6 3,570,835 - -0.1 3,570,915 - Shewana3_2970 0.16 -0.5 3,571,091 + Shewana3_2970 0.30 -1.3 3,571,099 - Shewana3_2970 0.31 -2.2 3,571,099 - Shewana3_2970 0.31 -0.2 3,571,209 - Shewana3_2970 0.39 +0.8 3,571,316 + Shewana3_2970 0.48 +1.4 3,571,406 - Shewana3_2970 0.55 -0.6 3,571,447 - Shewana3_2970 0.58 +1.4 3,571,481 + Shewana3_2970 0.61 -0.6 3,571,550 + Shewana3_2970 0.66 +0.5 3,571,983 + +0.1 3,572,266 + -0.3 3,572,364 + Shewana3_2971 0.33 -0.1 3,572,696 + +0.4 3,572,697 + -0.6 3,572,820 + Shewana3_2972 0.14 -0.1
Or see this region's nucleotide sequence