Experiment: A22 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2942 and Shewana3_2943 are separated by 143 nucleotides Shewana3_2943 and Shewana3_2944 are separated by 835 nucleotides
Shewana3_2942: Shewana3_2942 - isocitrate lyase (RefSeq), at 3,531,910 to 3,533,232
_2942
Shewana3_2943: Shewana3_2943 - malate synthase (RefSeq), at 3,533,376 to 3,535,025
_2943
Shewana3_2944: Shewana3_2944 - TonB-dependent receptor (RefSeq), at 3,535,861 to 3,538,332
_2944
Position (kb)
3533
3534
3535
3536 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3532.413 kb on - strand, within Shewana3_2942 at 3532.605 kb on - strand, within Shewana3_2942 at 3532.712 kb on + strand, within Shewana3_2942 at 3532.807 kb on - strand, within Shewana3_2942 at 3533.124 kb on + strand at 3533.132 kb on + strand at 3533.140 kb on - strand at 3533.205 kb on + strand at 3533.230 kb on - strand at 3533.290 kb on - strand at 3533.290 kb on - strand at 3533.294 kb on - strand at 3533.494 kb on - strand at 3533.539 kb on + strand at 3533.571 kb on - strand, within Shewana3_2943 at 3533.802 kb on + strand, within Shewana3_2943 at 3533.887 kb on + strand, within Shewana3_2943 at 3533.958 kb on + strand, within Shewana3_2943 at 3534.160 kb on + strand, within Shewana3_2943 at 3534.588 kb on - strand, within Shewana3_2943 at 3534.589 kb on - strand, within Shewana3_2943 at 3534.973 kb on + strand at 3535.449 kb on + strand at 3535.924 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.05 mg/ml remove 3,532,413 - Shewana3_2942 0.38 +0.2 3,532,605 - Shewana3_2942 0.53 +0.3 3,532,712 + Shewana3_2942 0.61 +0.3 3,532,807 - Shewana3_2942 0.68 +0.3 3,533,124 + -0.2 3,533,132 + +1.3 3,533,140 - -1.1 3,533,205 + -0.2 3,533,230 - -0.2 3,533,290 - +0.8 3,533,290 - -0.8 3,533,294 - +0.9 3,533,494 - +0.2 3,533,539 + -0.5 3,533,571 - Shewana3_2943 0.12 +0.1 3,533,802 + Shewana3_2943 0.26 -2.0 3,533,887 + Shewana3_2943 0.31 +0.3 3,533,958 + Shewana3_2943 0.35 -2.1 3,534,160 + Shewana3_2943 0.48 -2.1 3,534,588 - Shewana3_2943 0.73 -0.5 3,534,589 - Shewana3_2943 0.74 +2.3 3,534,973 + +1.3 3,535,449 + +1.3 3,535,924 - -1.4
Or see this region's nucleotide sequence