Experiment: A22 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2915 and Shewana3_2916 overlap by 1 nucleotides Shewana3_2916 and Shewana3_2917 overlap by 1 nucleotides Shewana3_2917 and Shewana3_2918 overlap by 1 nucleotides
Shewana3_2915: Shewana3_2915 - phage integrase family protein (RefSeq), at 3,490,175 to 3,491,653
_2915
Shewana3_2916: Shewana3_2916 - hypothetical protein (RefSeq), at 3,491,653 to 3,494,322
_2916
Shewana3_2917: Shewana3_2917 - hypothetical protein (RefSeq), at 3,494,322 to 3,494,999
_2917
Shewana3_2918: Shewana3_2918 - hypothetical protein (RefSeq), at 3,494,999 to 3,495,436
_2918
Position (kb)
3491
3492
3493
3494
3495 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3490.728 kb on + strand, within Shewana3_2915 at 3490.881 kb on + strand, within Shewana3_2915 at 3490.904 kb on + strand, within Shewana3_2915 at 3491.067 kb on + strand, within Shewana3_2915 at 3491.414 kb on - strand at 3491.470 kb on + strand, within Shewana3_2915 at 3491.480 kb on + strand, within Shewana3_2915 at 3491.611 kb on + strand at 3491.886 kb on + strand at 3491.894 kb on - strand at 3491.927 kb on - strand, within Shewana3_2916 at 3491.927 kb on - strand, within Shewana3_2916 at 3492.117 kb on - strand, within Shewana3_2916 at 3492.126 kb on - strand, within Shewana3_2916 at 3492.288 kb on + strand, within Shewana3_2916 at 3492.426 kb on + strand, within Shewana3_2916 at 3492.473 kb on + strand, within Shewana3_2916 at 3492.738 kb on - strand, within Shewana3_2916 at 3492.800 kb on + strand, within Shewana3_2916 at 3493.005 kb on + strand, within Shewana3_2916 at 3493.092 kb on - strand, within Shewana3_2916 at 3493.388 kb on + strand, within Shewana3_2916 at 3493.403 kb on + strand, within Shewana3_2916 at 3493.411 kb on - strand, within Shewana3_2916 at 3493.478 kb on + strand, within Shewana3_2916 at 3493.486 kb on - strand, within Shewana3_2916 at 3493.711 kb on + strand, within Shewana3_2916 at 3493.860 kb on + strand, within Shewana3_2916 at 3494.255 kb on + strand at 3494.467 kb on - strand, within Shewana3_2917 at 3494.528 kb on + strand, within Shewana3_2917 at 3494.530 kb on + strand, within Shewana3_2917 at 3494.561 kb on + strand, within Shewana3_2917 at 3494.561 kb on + strand, within Shewana3_2917 at 3494.603 kb on + strand, within Shewana3_2917 at 3494.611 kb on - strand, within Shewana3_2917 at 3494.644 kb on + strand, within Shewana3_2917 at 3494.686 kb on - strand, within Shewana3_2917 at 3494.925 kb on + strand, within Shewana3_2917 at 3495.197 kb on - strand, within Shewana3_2918 at 3495.218 kb on - strand, within Shewana3_2918
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.05 mg/ml remove 3,490,728 + Shewana3_2915 0.37 -0.8 3,490,881 + Shewana3_2915 0.48 +0.0 3,490,904 + Shewana3_2915 0.49 -0.2 3,491,067 + Shewana3_2915 0.60 +0.7 3,491,414 - +1.3 3,491,470 + Shewana3_2915 0.88 -1.8 3,491,480 + Shewana3_2915 0.88 -1.0 3,491,611 + -0.4 3,491,886 + +1.3 3,491,894 - +1.3 3,491,927 - Shewana3_2916 0.10 +1.3 3,491,927 - Shewana3_2916 0.10 +1.3 3,492,117 - Shewana3_2916 0.17 +1.3 3,492,126 - Shewana3_2916 0.18 +1.3 3,492,288 + Shewana3_2916 0.24 -1.3 3,492,426 + Shewana3_2916 0.29 +2.3 3,492,473 + Shewana3_2916 0.31 +0.7 3,492,738 - Shewana3_2916 0.41 +0.3 3,492,800 + Shewana3_2916 0.43 +0.6 3,493,005 + Shewana3_2916 0.51 -1.7 3,493,092 - Shewana3_2916 0.54 +1.3 3,493,388 + Shewana3_2916 0.65 +0.1 3,493,403 + Shewana3_2916 0.66 +1.3 3,493,411 - Shewana3_2916 0.66 +1.3 3,493,478 + Shewana3_2916 0.68 +0.9 3,493,486 - Shewana3_2916 0.69 -0.3 3,493,711 + Shewana3_2916 0.77 +0.6 3,493,860 + Shewana3_2916 0.83 +0.3 3,494,255 + -0.1 3,494,467 - Shewana3_2917 0.21 +1.3 3,494,528 + Shewana3_2917 0.30 -0.5 3,494,530 + Shewana3_2917 0.31 -0.3 3,494,561 + Shewana3_2917 0.35 -0.5 3,494,561 + Shewana3_2917 0.35 -0.6 3,494,603 + Shewana3_2917 0.41 -1.1 3,494,611 - Shewana3_2917 0.43 +1.3 3,494,644 + Shewana3_2917 0.47 +0.7 3,494,686 - Shewana3_2917 0.54 +1.3 3,494,925 + Shewana3_2917 0.89 +0.0 3,495,197 - Shewana3_2918 0.45 +1.3 3,495,218 - Shewana3_2918 0.50 +1.3
Or see this region's nucleotide sequence