Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2896
Experiment: A22 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | A22 0.05 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,464,801 | - | Shewana3_2895 | 0.16 | -0.3 | |
3,464,884 | + | Shewana3_2895 | 0.52 | +1.3 | |
3,464,884 | + | Shewana3_2895 | 0.52 | -0.5 | |
3,464,940 | + | Shewana3_2895 | 0.76 | -0.6 | |
3,465,070 | - | -1.0 | |||
3,465,200 | - | -1.3 | |||
3,465,238 | - | -0.8 | |||
3,465,342 | - | Shewana3_2896 | 0.13 | -0.3 | |
3,465,387 | - | Shewana3_2896 | 0.16 | -0.4 | |
3,465,518 | + | Shewana3_2896 | 0.25 | +1.3 | |
3,465,526 | - | Shewana3_2896 | 0.26 | -0.1 | |
3,465,706 | + | Shewana3_2896 | 0.38 | +0.3 | |
3,465,808 | - | Shewana3_2896 | 0.45 | -1.2 | |
3,466,095 | - | Shewana3_2896 | 0.65 | -0.5 | |
3,466,095 | - | Shewana3_2896 | 0.65 | -0.5 | |
3,466,341 | + | Shewana3_2896 | 0.82 | +1.3 | |
3,466,419 | - | Shewana3_2896 | 0.87 | -0.3 | |
3,466,567 | - | -0.0 | |||
3,466,731 | - | -1.1 | |||
3,466,739 | - | +0.4 | |||
3,466,861 | - | -0.5 | |||
3,466,900 | + | +0.3 | |||
3,466,931 | - | motB | Shewana3_2897 | 0.12 | +0.3 |
3,467,033 | - | motB | Shewana3_2897 | 0.23 | +1.0 |
3,467,054 | + | motB | Shewana3_2897 | 0.26 | +0.4 |
3,467,149 | - | motB | Shewana3_2897 | 0.36 | +0.3 |
3,467,149 | - | motB | Shewana3_2897 | 0.36 | -0.1 |
3,467,297 | + | motB | Shewana3_2897 | 0.52 | +1.3 |
3,467,546 | - | motB | Shewana3_2897 | 0.79 | -0.4 |
Or see this region's nucleotide sequence