Experiment: A22 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2784 and Shewana3_2785 are separated by 93 nucleotides Shewana3_2785 and Shewana3_2786 are separated by 118 nucleotides Shewana3_2786 and Shewana3_2787 are separated by 424 nucleotides
Shewana3_2784: Shewana3_2784 - ferredoxin-type protein NapF (RefSeq), at 3,323,500 to 3,323,985
_2784
Shewana3_2785: Shewana3_2785 - hypothetical protein (RefSeq), at 3,324,079 to 3,324,522
_2785
Shewana3_2786: Shewana3_2786 - LysR family transcriptional regulator (RefSeq), at 3,324,641 to 3,325,654
_2786
Shewana3_2787: Shewana3_2787 - decaheme cytochrome c (RefSeq), at 3,326,079 to 3,328,367
_2787
Position (kb)
3324
3325
3326 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3323.727 kb on + strand, within Shewana3_2784 at 3323.735 kb on - strand, within Shewana3_2784 at 3324.007 kb on - strand at 3324.019 kb on + strand at 3324.031 kb on + strand at 3324.106 kb on - strand at 3324.129 kb on - strand, within Shewana3_2785 at 3324.214 kb on - strand, within Shewana3_2785 at 3324.214 kb on - strand, within Shewana3_2785 at 3324.330 kb on + strand, within Shewana3_2785 at 3324.408 kb on + strand, within Shewana3_2785 at 3324.538 kb on + strand at 3324.539 kb on + strand at 3324.555 kb on - strand at 3324.608 kb on - strand at 3324.687 kb on - strand at 3324.717 kb on + strand at 3324.717 kb on + strand at 3324.717 kb on + strand at 3324.717 kb on + strand at 3324.717 kb on + strand at 3324.818 kb on + strand, within Shewana3_2786 at 3324.890 kb on + strand, within Shewana3_2786 at 3325.050 kb on - strand, within Shewana3_2786 at 3325.050 kb on - strand, within Shewana3_2786 at 3325.071 kb on - strand, within Shewana3_2786 at 3325.263 kb on + strand, within Shewana3_2786 at 3325.271 kb on - strand, within Shewana3_2786 at 3325.271 kb on - strand, within Shewana3_2786 at 3325.412 kb on + strand, within Shewana3_2786 at 3325.448 kb on + strand, within Shewana3_2786 at 3325.815 kb on + strand at 3326.027 kb on + strand at 3326.298 kb on - strand at 3326.580 kb on + strand, within Shewana3_2787
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.05 mg/ml remove 3,323,727 + Shewana3_2784 0.47 +2.2 3,323,735 - Shewana3_2784 0.48 +3.2 3,324,007 - +1.2 3,324,019 + +1.2 3,324,031 + +1.2 3,324,106 - +0.7 3,324,129 - Shewana3_2785 0.11 +1.2 3,324,214 - Shewana3_2785 0.30 -0.2 3,324,214 - Shewana3_2785 0.30 +0.6 3,324,330 + Shewana3_2785 0.57 +0.6 3,324,408 + Shewana3_2785 0.74 -0.2 3,324,538 + +1.2 3,324,539 + +1.2 3,324,555 - +1.2 3,324,608 - +1.2 3,324,687 - +1.2 3,324,717 + +1.2 3,324,717 + +1.2 3,324,717 + -0.6 3,324,717 + +1.2 3,324,717 + +1.2 3,324,818 + Shewana3_2786 0.17 -0.3 3,324,890 + Shewana3_2786 0.25 +0.6 3,325,050 - Shewana3_2786 0.40 +1.7 3,325,050 - Shewana3_2786 0.40 -0.3 3,325,071 - Shewana3_2786 0.42 -0.3 3,325,263 + Shewana3_2786 0.61 +1.2 3,325,271 - Shewana3_2786 0.62 +1.2 3,325,271 - Shewana3_2786 0.62 +1.2 3,325,412 + Shewana3_2786 0.76 +1.2 3,325,448 + Shewana3_2786 0.80 +1.2 3,325,815 + +1.2 3,326,027 + +0.5 3,326,298 - -0.7 3,326,580 + Shewana3_2787 0.22 +1.2
Or see this region's nucleotide sequence