Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2760
Experiment: A22 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | A22 0.05 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,295,402 | - | Shewana3_2759 | 0.40 | -0.3 | |
3,295,485 | - | Shewana3_2759 | 0.49 | -0.3 | |
3,295,553 | + | Shewana3_2759 | 0.57 | +0.8 | |
3,295,589 | + | Shewana3_2759 | 0.61 | -0.8 | |
3,295,789 | + | Shewana3_2759 | 0.83 | +2.2 | |
3,295,858 | - | +1.2 | |||
3,295,889 | + | -0.2 | |||
3,295,892 | - | +1.2 | |||
3,296,005 | - | -1.1 | |||
3,296,005 | - | +1.2 | |||
3,296,923 | + | Shewana3_2760 | 0.52 | +1.2 | |
3,296,976 | + | Shewana3_2760 | 0.55 | +1.2 | |
3,297,390 | + | Shewana3_2760 | 0.80 | +1.2 | |
3,297,413 | - | Shewana3_2760 | 0.82 | -0.3 | |
3,297,680 | + | +0.5 | |||
3,297,716 | + | +0.6 | |||
3,297,957 | - | +0.9 | |||
3,297,983 | - | +0.2 | |||
3,298,003 | + | -1.1 | |||
3,298,031 | - | +1.2 | |||
3,298,153 | + | +1.2 | |||
3,298,241 | - | -0.7 | |||
3,298,441 | + | Shewana3_2761 | 0.13 | +0.2 | |
3,298,480 | + | Shewana3_2761 | 0.15 | -0.3 | |
3,298,568 | + | Shewana3_2761 | 0.19 | -0.3 | |
3,298,627 | + | Shewana3_2761 | 0.22 | +0.7 | |
3,298,680 | + | Shewana3_2761 | 0.24 | +1.2 |
Or see this region's nucleotide sequence